Package: geno2proteo 0.0.6
Yaoyong Li
geno2proteo: Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci
Using the DNA sequence and gene annotation files provided in 'ENSEMBL' <https://www.ensembl.org/index.html>, the functions implemented in the package try to find the DNA sequences and protein sequences of any given genomic loci, and to find the genomic coordinates and protein sequences of any given protein locations, which are the frequent tasks in the analysis of genomic and proteomic data.
Authors:
geno2proteo_0.0.6.tar.gz
geno2proteo_0.0.6.tar.gz(r-4.5-noble)geno2proteo_0.0.6.tar.gz(r-4.4-noble)
geno2proteo_0.0.6.tgz(r-4.4-emscripten)geno2proteo_0.0.6.tgz(r-4.3-emscripten)
geno2proteo.pdf |geno2proteo.html✨
geno2proteo/json (API)
NEWS
| # Install 'geno2proteo' in R: |
| install.packages('geno2proteo', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneticsproteomicssequencingannotationgenomeannotationgenomeassembly
Last updated 3 years agofrom:6df760f7f0. Checks:OK: 1 WARNING: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-linux | WARNING | Oct 31 2024 |
Exports:generatingCDSaaFilegenomicLocsToProteinSequencegenomicLocsToWholeDNASequenceproteinLocsToGenomicproteinLocsToProteinSeq
Dependencies:askpassBiocGenericscurlgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitemimeopensslR.methodsS3R.ooR.utilsR6RUnitS4VectorssysUCSC.utilsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci | geno2proteo-package geno2proteo |
| Generating a file containing the DNA and AA sequences of all the protein coding regions (CDSs) in a genome | generatingCDSaaFile |
| Obtaining the protein sequences and DNA sequences of the coding regions within a list of loci in genome | genomicLocsToProteinSequence |
| Obtaining the DNA sequences of a list of genomic loci | genomicLocsToWholeDNASequence |
| Obtaining the genomic coordinates for a list of protein sections | proteinLocsToGenomic |
| Obtaining the amino acid sequences of a list of protein sections | proteinLocsToProteinSeq |