Package: geno2proteo 0.0.6

Yaoyong Li

geno2proteo: Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci

Using the DNA sequence and gene annotation files provided in 'ENSEMBL' <https://www.ensembl.org/index.html>, the functions implemented in the package try to find the DNA sequences and protein sequences of any given genomic loci, and to find the genomic coordinates and protein sequences of any given protein locations, which are the frequent tasks in the analysis of genomic and proteomic data.

Authors:Yaoyong Li

geno2proteo_0.0.6.tar.gz
geno2proteo_0.0.6.tar.gz(r-4.5-noble)geno2proteo_0.0.6.tar.gz(r-4.4-noble)
geno2proteo_0.0.6.tgz(r-4.4-emscripten)geno2proteo_0.0.6.tgz(r-4.3-emscripten)
geno2proteo.pdf |geno2proteo.html✨
geno2proteo/json (API)
NEWS

# Install 'geno2proteo' in R:
install.packages('geno2proteo', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsproteomicssequencingannotationgenomeannotationgenomeassembly

2.00 score 204 downloads 1 mentions 5 exports 21 dependencies

Last updated 3 years agofrom:6df760f7f0. Checks:2 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 29 2025
R-4.5-linuxOKJan 29 2025

Exports:generatingCDSaaFilegenomicLocsToProteinSequencegenomicLocsToWholeDNASequenceproteinLocsToGenomicproteinLocsToProteinSeq

Dependencies:askpassBiocGenericscurlgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitemimeopensslR.methodsS3R.ooR.utilsR6RUnitS4VectorssysUCSC.utilsXVector

An Introduction to the geno2proteo package

Rendered fromgeno2proteoIntroduction.Rnwusingutils::Sweaveon Jan 29 2025.

Last update: 2022-06-13
Started: 2017-12-12