{
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  "Package": "geno2proteo",
  "Type": "Package",
  "Title": "Finding the DNA and Protein Sequences of Any Genomic or\nProteomic Loci",
  "Version": "0.0.6",
  "Date": "2022-06-10",
  "Author": "Yaoyong Li",
  "Maintainer": "Yaoyong Li<liyaoyong85@gmail.com>",
  "biocViews": "Genetics, Proteomics, Sequencing, Annotation,\nGenomeAnnotation, GenomeAssembly",
  "Description": "Using the DNA sequence and gene annotation files provided\nin 'ENSEMBL' <https://www.ensembl.org/index.html>, the\nfunctions implemented in the package try to find the DNA\nsequences and protein sequences of any given genomic loci, and\nto find the genomic coordinates and protein sequences of any\ngiven protein locations, which are the frequent tasks in the\nanalysis of genomic and proteomic data.",
  "License": "Artistic-2.0",
  "SystemRequirements": "Perl (>= 2.0.0)",
  "LazyLoad": "yes",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-11 10:10:42 UTC",
    "User": "root"
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  "Config/pak/sysreqs": "perl",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2022-06-13 09:40:02 UTC",
  "RemoteUrl": "https://github.com/cran/geno2proteo",
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  "_upstream": "https://github.com/cran/geno2proteo",
  "_commit": {
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    "author": "Yaoyong Li <liyaoyong85@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.0.6\n",
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    "name": "Yaoyong Li",
    "email": "liyaoyong85@gmail.com"
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  "_dependencies": [
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  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "genetics",
    "proteomics",
    "sequencing",
    "annotation",
    "genomeannotation",
    "genomeassembly"
  ],
  "_stars": 0,
  "_userbio": {
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    "type": "organization",
    "name": "cran",
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  },
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    "count": 200,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/geno2proteo"
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  "_mentions": 1,
  "_searchresults": 9,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
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      "date": "2022-02-10"
    },
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      "date": "2022-06-13"
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  "_exports": [
    "generatingCDSaaFile",
    "genomicLocsToProteinSequence",
    "genomicLocsToWholeDNASequence",
    "proteinLocsToGenomic",
    "proteinLocsToProteinSeq"
  ],
  "_help": [
    {
      "page": "geno2proteo-package",
      "title": "Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci",
      "topics": [
        "geno2proteo-package",
        "geno2proteo"
      ]
    },
    {
      "page": "generatingCDSaaFile",
      "title": "Generating a file containing the DNA and AA sequences of all the protein coding regions (CDSs) in a genome",
      "topics": [
        "generatingCDSaaFile"
      ]
    },
    {
      "page": "genomicLocsToProteinSequence",
      "title": "Obtaining the protein sequences and DNA sequences of the coding regions within a list of loci in genome",
      "topics": [
        "genomicLocsToProteinSequence"
      ]
    },
    {
      "page": "genomicLocsToWholeDNASequence",
      "title": "Obtaining the DNA sequences of a list of genomic loci",
      "topics": [
        "genomicLocsToWholeDNASequence"
      ]
    },
    {
      "page": "proteinLocsToGenomic",
      "title": "Obtaining the genomic coordinates for a list of protein sections",
      "topics": [
        "proteinLocsToGenomic"
      ]
    },
    {
      "page": "proteinLocsToProteinSeq",
      "title": "Obtaining the amino acid sequences of a list of protein sections",
      "topics": [
        "proteinLocsToProteinSeq"
      ]
    }
  ],
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    "S4Vectors",
    "Seqinfo"
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  "_vignettes": [
    {
      "source": "geno2proteoIntroduction.Rnw",
      "filename": "geno2proteoIntroduction.pdf",
      "title": "An Introduction to the geno2proteo package",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2017-12-12 17:27:07",
      "modified": "2022-06-13 09:40:02",
      "commits": 4
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