Package: fat2Lpoly 1.2.5

Alexandre BUREAU

fat2Lpoly: Two-Locus Family-Based Association Test with Polytomous Outcome

Performs family-based association tests with a polytomous outcome under 2-locus and 1-locus models defined by some design matrix.

Authors:Alexandre BUREAU <[email protected]> and Jordie Croteau <[email protected]>

# Install 'fat2Lpoly' in R:

install.packages('fat2Lpoly', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

Last updated 3 years agofrom:0b21faa2ae. Checks:1 OK, 1 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 07 2025
R-4.5-linux	NOTE	Feb 07 2025

Help page	Topics
Setting-up design matrices for a polytomous model with a single biallelic marker.	design.1locus
Setting-up the design matrix for a logistic model with two biallelic markers.	design.dichotomous
Setting-up design matrices for the endophenotype-to-disease model.	design.endo2disease
Setting-up design matrices for a full polytomous model with two biallelic markers.	design.full
Two-locus Family-based Association Test with Polytomous Outcome	fat2Lpoly
Example results output by the function 'fat2Lpoly.withinR'	fat2Lpoly.allSNPs
Two-locus Family-based Association Test with Polytomous Outcome (all arguments within R)	fat2Lpoly.withinR
function to compute scores and p-values	get.scores.pvalues
Example dataset returned by the function 'read.merlin.files'	ped.x.all
function to read input files in Merlin format	read.merlin.files