{ "_id": "6ab516b8c18b73ce90b4f3a7", "Package": "fat2Lpoly", "Type": "Package", "Title": "Two-Locus Family-Based Association Test with Polytomous Outcome", "Version": "1.2.6", "Date": "2025-07-23", "Authors@R": "c(person(given = \"Alexandre\",\nfamily = \"Bureau\",\nrole = c(\"aut\", \"cre\"),\nemail = \"alexandre.bureau@msp.ulaval.ca\"),\nperson(given = \"Jordie\",\nfamily = \"Croteau\",\nrole = \"aut\",\nemail = \"jorcroteau@gmail.com\"))", "Description": "Performs family-based association tests with a polytomous\noutcome under 2-locus and 1-locus models defined by some design\nmatrix.", "License": "GPL", "LazyLoad": "yes", "URL": "https://www.cervo.ulaval.ca/pages_perso_chercheurs/bureau_a/", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-24 12:22:23 UTC", "User": "root" }, "Author": "Alexandre Bureau [aut, cre], Jordie Croteau [aut]", "Maintainer": "Alexandre Bureau ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-07-23 14:00:02 UTC", "RemoteUrl": "https://github.com/cran/fat2Lpoly", "RemoteRef": "HEAD", "RemoteSha": "f2f24b1544cd384da1e723bffd6e215ce859cb74", "_user": "cran", "_type": "src", "_file": "fat2Lpoly_1.2.6.tar.gz", "_fileid": "https://r2.ropensci.org/583dc22f4549c7814d304caa2a123f8c50f6ba41f604ef1593b0eb3594c2da84", "_filesize": 557089, "_sha256": "583dc22f4549c7814d304caa2a123f8c50f6ba41f604ef1593b0eb3594c2da84", "_expires": "2027-01-02T12:25:26.000Z", "_created": "2026-09-24T12:22:23.000Z", "_published": "2026-09-24T12:25:28.518Z", "_jobs": [ { "job": 107629661887, "time": 135, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10806484255" }, { "job": 107629661929, "time": 140, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10806638904" }, { "job": 107628554749, "time": 191, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10807315948" }, { "job": 107629661792, "time": 130, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10807331017" }, { "job": 107629661818, "time": 92, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10807137943" }, { "job": 107629661860, "time": 84, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10807665571" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/cran/actions/runs/35998294940", "_status": "success", "_upstream": "https://github.com/cran/fat2Lpoly", "_commit": { "id": "f2f24b1544cd384da1e723bffd6e215ce859cb74", "author": "Alexandre Bureau ", "committer": "cran-robot ", "message": "version 1.2.6\n", "time": 1753279202 }, "_maintainer": { "name": "Alexandre Bureau", "email": "alexandre.bureau@msp.ulaval.ca" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.2", "role": "Depends" }, { "package": "kinship2", "role": "Imports" }, { "package": "multgee", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 630, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 287, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/fat2Lpoly" }, "_mentions": 1, "_searchresults": 6, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/fat2Lpoly.html", "extra/manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.0.2", "date": "2014-04-02" }, { "version": "1.1.1", "date": "2014-10-17" }, { "version": "1.2.2", "date": "2015-10-21" }, { "version": "1.2.3", "date": "2018-05-17" }, { "version": "1.2.4", "date": "2019-12-18" }, { "version": "1.2.5", "date": "2022-01-04" }, { "version": "1.2.6", "date": "2025-07-23" } ], "_exports": [ "calcule.poids.alphafixe", "calcule.poids.Chen", "design.1locus", "design.dichotomous", "design.endo2disease", "design.full", "fat2Lpoly", "fat2Lpoly.withinR", "get.scores.pvalues", "read.merlin.files" ], "_datasets": [ { "name": "fat2Lpoly.allSNPs", "title": "Example results output by the function 'fat2Lpoly.withinR'", "object": "fat2Lpoly.allSNPs", "file": "fat2Lpoly.allSNPs.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "ped.x.all", "title": "Example dataset returned by the function 'read.merlin.files'", "object": "ped.x.all", "file": "ped.x.all.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "design.1locus", "title": "Setting-up design matrices for a polytomous model with a single biallelic marker.", "topics": [ "design.1locus" ] }, { "page": "design.dichotomous", "title": "Setting-up the design matrix for a logistic model with two biallelic markers.", "topics": [ "design.dichotomous" ] }, { "page": "design.endo2disease", "title": "Setting-up design matrices for the endophenotype-to-disease model.", "topics": [ "design.endo2disease" ] }, { "page": "design.full", "title": "Setting-up design matrices for a full polytomous model with two biallelic markers.", "topics": [ "design.full" ] }, { "page": "fat2Lpoly", "title": "Two-locus Family-based Association Test with Polytomous Outcome", "topics": [ "fat2Lpoly" ] }, { "page": "fat2Lpoly.allSNPs", "title": "Example results output by the function 'fat2Lpoly.withinR'", "topics": [ "fat2Lpoly.allSNPs" ] }, { "page": "fat2Lpoly.withinR", "title": "Two-locus Family-based Association Test with Polytomous Outcome (all arguments within R)", "topics": [ "fat2Lpoly.withinR" ] }, { "page": "get.scores.pvalues", "title": "function to compute scores and p-values", "topics": [ "get.scores.pvalues" ] }, { "page": "ped.x.all", "title": "Example dataset returned by the function 'read.merlin.files'", "topics": [ "ped.x.all" ] }, { "page": "read.merlin.files", "title": "function to read input files in Merlin format", "topics": [ "read.merlin.files" ] } ], "_rundeps": [ "evaluate", "gnm", "highr", "kinship2", "knitr", "lattice", "MASS", "Matrix", "multgee", "nnet", "quadprog", "qvcalc", "Rcpp", "RcppArmadillo", "relimp", "VGAM", "xfun", "yaml" ], "_score": 1, "_indexed": true, "_nocasepkg": "fat2lpoly", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.6", "date": "2026-09-24T12:24:24.000Z", "distro": "resolute", "commit": "f2f24b1544cd384da1e723bffd6e215ce859cb74", "fileid": "https://r2.ropensci.org/1b883aa3a0609949f03ae96fede6e8c85afea94483403c50ae37a221e0787371", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/35998294940" }, { "r": "4.6.1", "os": "linux", "version": "1.2.6", "date": "2026-09-24T12:24:28.000Z", "distro": "resolute", "commit": "f2f24b1544cd384da1e723bffd6e215ce859cb74", "fileid": "https://r2.ropensci.org/dac5dd0a67fc5a3a59ef7088f72ba4483263ec922e73df125c58f6226710ad0c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/35998294940" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.6", "date": "2026-09-24T12:24:52.000Z", "commit": "f2f24b1544cd384da1e723bffd6e215ce859cb74", "fileid": "https://r2.ropensci.org/059559077de4c9b490ae4e31b49d5eae118f5161ebcee44af2e8f781000e92b3", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/35998294940" }, { "r": "4.7.0", "os": "win", "version": "1.2.6", "date": "2026-09-24T12:23:31.000Z", "commit": "f2f24b1544cd384da1e723bffd6e215ce859cb74", "fileid": "https://r2.ropensci.org/cd9791e2d37f4eaae593497fb1c00117187c33f0c8f351daf5c2b62dfc00605e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/35998294940" }, { "r": "4.6.1", "os": "win", "version": "1.2.6", "date": "2026-09-24T12:23:30.000Z", "commit": "f2f24b1544cd384da1e723bffd6e215ce859cb74", "fileid": "https://r2.ropensci.org/0a98a28d40a8d60160121d957600d0817b08c06c9126a46e536949c4916d4af7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/35998294940" } ] }