Package: falcon 0.2
Hao Chen
falcon: Finding Allele-Specific Copy Number in Next-Generation Sequencing Data
This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.
Authors:
falcon_0.2.tar.gz
falcon_0.2.tar.gz(r-4.5-noble)falcon_0.2.tar.gz(r-4.4-noble)
falcon_0.2.tgz(r-4.4-emscripten)falcon_0.2.tgz(r-4.3-emscripten)
falcon.pdf |falcon.html✨
falcon/json (API)
# Install 'falcon' in R: |
install.packages('falcon', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- pos - Position
- readMatrix - An example reads count data
- tauhat - Estimated Break Points
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 9 years agofrom:b12c2b678f. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 11 2024 |
R-4.5-linux-x86_64 | OK | Oct 11 2024 |
Exports:getASCNgetChangepointsview
Dependencies:
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Finding Allele-Specific Copy Number in Next-Generation Sequencing Data | falcon |
Getting Allele-specific DNA Copy Number | getASCN |
Getting Change-points | getChangepoints |
Position (bp) | pos |
An example reads count data | readMatrix |
Estimated Break Points | tauhat |
Viewing Data with Allele-specific Copy Number | view |