Package: falcon 0.2

Hao Chen

falcon: Finding Allele-Specific Copy Number in Next-Generation Sequencing Data

This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.

Authors:Hao Chen and Nancy R. Zhang

falcon_0.2.tar.gz
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falcon_0.2.tgz(r-4.4-emscripten)falcon_0.2.tgz(r-4.3-emscripten)
falcon.pdf |falcon.html
falcon/json (API)

# Install 'falcon' in R:
install.packages('falcon', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

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This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.78 score 15 scripts 135 downloads 6 mentions 3 exports 0 dependencies

Last updated 9 years agofrom:b12c2b678f. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 10 2024
R-4.5-linux-x86_64OKDec 10 2024

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