Package: falcon 0.2
Hao Chen
falcon: Finding Allele-Specific Copy Number in Next-Generation Sequencing Data
This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.
Authors:
falcon_0.2.tar.gz
falcon_0.2.tar.gz(r-4.5-noble)falcon_0.2.tar.gz(r-4.4-noble)
falcon_0.2.tgz(r-4.4-emscripten)falcon_0.2.tgz(r-4.3-emscripten)
falcon.pdf |falcon.html✨
falcon/json (API)
| # Install 'falcon' in R: |
| install.packages('falcon', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- pos - Position
- readMatrix - An example reads count data
- tauhat - Estimated Break Points
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 9 years agofrom:b12c2b678f. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 10 2024 |
| R-4.5-linux-x86_64 | OK | Nov 10 2024 |
Exports:getASCNgetChangepointsview
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Finding Allele-Specific Copy Number in Next-Generation Sequencing Data | falcon |
| Getting Allele-specific DNA Copy Number | getASCN |
| Getting Change-points | getChangepoints |
| Position (bp) | pos |
| An example reads count data | readMatrix |
| Estimated Break Points | tauhat |
| Viewing Data with Allele-specific Copy Number | view |