{ "_id": "6a13eddaacfb0bcc41d2f54e", "Package": "falcon", "Version": "0.2", "Date": "2016-04-20", "Title": "Finding Allele-Specific Copy Number in Next-Generation\nSequencing Data", "Author": "Hao Chen and Nancy R. Zhang", "Maintainer": "Hao Chen ", "Description": "This is a method for Allele-specific DNA Copy Number\nProfiling using Next-Generation Sequencing. Given the\nallele-specific coverage at the variant loci, this program\nsegments the genome into regions of homogeneous allele-specific\ncopy number. It requires, as input, the read counts for each\nvariant allele in a pair of case and control samples. For\ndetection of somatic mutations, the case and control samples\ncan be the tumor and normal sample from the same individual.", "License": "GPL (>= 2)", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-25 06:33:57 UTC", "User": "root" }, "Repository": "https://cran.r-universe.dev", "Date/Publication": "2016-04-21 08:20:42 UTC", "RemoteUrl": "https://github.com/cran/falcon", "RemoteRef": "HEAD", "RemoteSha": "b12c2b678fbeae643f663c4a7c8d8ac3495032b7", "MD5sum": "0e970fa3e871c3306101059de111e7e3", "_user": "cran", "_type": "src", "_file": "falcon_0.2.tar.gz", "_fileid": "5a66540f23294b8cb8b351f5622541b0c5ce641ccdf6014d65d58f198853fc6b", "_filesize": 196996, "_sha256": "5a66540f23294b8cb8b351f5622541b0c5ce641ccdf6014d65d58f198853fc6b", "_created": "2026-05-25T06:33:57.000Z", "_published": "2026-05-25T06:36:10.420Z", "_distro": "noble", "_jobs": [ { "job": 77667540735, "time": 98, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7192946826" }, { "job": 77667540742, "time": 85, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7192943887" }, { "job": 77667540729, "time": 100, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7192947435" }, { "job": 77667540738, "time": 94, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7192946196" }, { "job": 77667296834, "time": 135, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7192922121" }, { "job": 77667540707, "time": 87, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7192944555" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26386876803", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/falcon", "_commit": { "id": "b12c2b678fbeae643f663c4a7c8d8ac3495032b7", "author": "Hao Chen ", "committer": "cran-robot ", "message": "version 0.2\n", "time": 1461226842 }, "_maintainer": { "name": "Hao Chen", "email": "hxchen@ucdavis.edu" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.1", "role": "Depends" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 157, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/falcon" }, "_mentions": 6, "_searchresults": 15, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/falcon.html", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "0.1", "date": "2014-04-24" }, { "version": "0.2", "date": "2016-04-21" } ], "_exports": [ "getASCN", "getChangepoints", "view" ], "_datasets": [ { "name": "pos", "title": "Position (bp)", "object": "Example", "file": "Example.rda", "class": [ "integer" ], "fields": [], "table": false, "tojson": true }, { "name": "readMatrix", "title": "An example reads count data", "object": "Example", "file": "Example.rda", "class": [ "data.frame" ], "fields": [ "AT", "BT", "AN", "BN" ], "rows": 6309, "table": true, "tojson": true }, { "name": "tauhat", "title": "Estimated Break Points", "object": "Example", "file": "Example.rda", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "falcon", "title": "Finding Allele-Specific Copy Number in Next-Generation Sequencing Data", "topics": [ "falcon" ] }, { "page": "getASCN", "title": "Getting Allele-specific DNA Copy Number", "topics": [ "getASCN" ] }, { "page": "getChangepoints", "title": "Getting Change-points", "topics": [ "getChangepoints" ] }, { "page": "pos", "title": "Position (bp)", "topics": [ "pos" ] }, { "page": "readMatrix", "title": "An example reads count data", "topics": [ "readMatrix" ] }, { "page": "tauhat", "title": "Estimated Break Points", "topics": [ "tauhat" ] }, { "page": "view", "title": "Viewing Data with Allele-specific Copy Number", "topics": [ "view" ] } ], "_rundeps": [], "_score": 1.954242509439325, "_indexed": true, "_nocasepkg": "falcon", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2", "date": "2026-05-25T06:35:41.000Z", "distro": "noble", "arch": "aarch64", "commit": "b12c2b678fbeae643f663c4a7c8d8ac3495032b7", "fileid": "ae6baf849f5d608607eeb44c1c5742e2d0ceaf7e61893ac97612652620ce2c40", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26386876803" }, { "r": "4.7.0", "os": "linux", "version": "0.2", "date": "2026-05-25T06:35:27.000Z", "distro": "noble", "arch": "x86_64", "commit": "b12c2b678fbeae643f663c4a7c8d8ac3495032b7", "fileid": "71b1d211b9b7f6d820de52fe5311a52f732cf32776daa441b51ab99d1aa332e8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26386876803" }, { "r": "4.6.0", "os": "linux", "version": "0.2", "date": "2026-05-25T06:35:43.000Z", "distro": "noble", "arch": "aarch64", "commit": "b12c2b678fbeae643f663c4a7c8d8ac3495032b7", "fileid": "7c9d965515e0163f21a9ae074e5530196f306b9825b7a326e4298a07dd1a6aff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26386876803" }, { "r": "4.6.0", "os": "linux", "version": "0.2", "date": "2026-05-25T06:35:36.000Z", "distro": "noble", "arch": "x86_64", "commit": "b12c2b678fbeae643f663c4a7c8d8ac3495032b7", "fileid": "bf6ba8c31d9c5c89f99a8f71f60203c73c57f7ad996f1f39a5944ad7e5812d1e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26386876803" }, { "r": "4.6.0", "os": "wasm", "version": "0.2", "date": "2026-05-25T06:35:39.000Z", "arch": "emscripten", "commit": "b12c2b678fbeae643f663c4a7c8d8ac3495032b7", "fileid": "2f86789f7c6701ca3adae53d689a01585af0072a49cf384d7a80c1c3d8e9c726", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/26386876803" } ] }