Package: evolqg 0.3-4
Diogo Melo
evolqg: Evolutionary Quantitative Genetics
Provides functions for covariance matrix comparisons, estimation of repeatabilities in measurements and matrices, and general evolutionary quantitative genetics tools. Melo D, Garcia G, Hubbe A, Assis A P, Marroig G. (2016) <doi:10.12688/f1000research.7082.3>.
Authors:
evolqg_0.3-4.tar.gz
evolqg_0.3-4.tar.gz(r-4.5-noble)evolqg_0.3-4.tar.gz(r-4.4-noble)
evolqg_0.3-4.tgz(r-4.4-emscripten)evolqg_0.3-4.tgz(r-4.3-emscripten)
evolqg.pdf |evolqg.html✨
evolqg/json (API)
| # Install 'evolqg' in R: |
| install.packages('evolqg', repos = 'https://cloud.r-project.org') |
Bug tracker:https://github.com/lem-usp/evolqg/issues
- dentus - Example multivariate data set
- dentus.tree - Tree for dentus example species
- ratones - Linear distances for five mouse lines
Last updated 1 years agofrom:5c3ca5b979. Checks:2 OK, 1 NOTE. Indexed: no.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 30 2025 |
| R-4.5-linux-x86_64 | NOTE | Mar 30 2025 |
| R-4.4-linux-x86_64 | OK | Mar 30 2025 |
Exports:AlphaRepAutonomyBayesianCalculateMatrixBootstrapR2BootstrapRepBootstrapStatCalcAVGCalcEigenVarCalcICVCalcR2CalcR2CvCorrectedCalcRepeatabilityCalculateMatrixCenter2MeanJacobianFastConditionalEvolvabilityConstraintsCreateHypotMatrixDeltaZCorrDriftTestEigenTensorDecompositionEvolvabilityExtendMatrixFlexibilityJackKnifeMINTJacobianArrayKrzCorKrzProjectionKrzSubspaceKrzSubspaceBootstrapKrzSubspaceDataFrameLModularityLocalShapeVariablesMantelCorMantelModTestMatrixCompareMatrixCorMatrixDistanceMeanMatrixMeanMatrixStatisticsMINTMonteCarloR2MonteCarloRepMonteCarloStatMultiMahalanobisMultivDriftTestNormNormalizeOverlapDistPartition2HypotMatrixPc1PercentPCAsimilarityPCScoreCorrelationPhyloComparePhyloMantelPhyloWPlotKrzSubspacePlotRarefactionPlotRSprojectionPlotTreeDriftTestPrintMatrixProjectMatrixRandomMatrixRandomSkewersRarefactionRarefactionStatRelativeEigenanalysisRemoveSizeRespondabilityRevertMatrixRiemannDistRotate2MidlineMatrixRSProjectionSRDTestModularityTPSTreeDriftTest
Dependencies:apebase64encbezierbslibcachemclassclassIntcliclustercodacodetoolscolorRampscolorspacecpp11DBIdigestdoParallele1071evaluateexpmfansifarverfastmapfontawesomeforeachfsggplot2gluegtablehighrhtmltoolshtmlwidgetsigraphisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixModelsmcmcMCMCpackmemoisemgcvmimeMorphomunsellmvtnormnlmenumDerivpermutepillarpkgconfigplyrproxyquantregR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenreshape2rglrlangrmarkdownRvcgs2sassscalessfSparseMstringistringrsurvivaltibbletinytexunitsutf8vctrsveganviridisLitewithrwkxfunyaml
Citation
To cite evolqg in publication use:
Melo D, Garcia G, Hubbe A, Assis AP, Marroig G (2016). “EvolQG - An R package for evolutionary quantitative genetics [version 3; referees: 2 approved, 1 approved with reservations].” F1000Research, 4(925). doi:10.12688/f1000research.7082.3.
Remember to cite EvolQG's version number. Find it with 'help(package=evolqg)'.
Corresponding BibTeX entry:
@Article{Melo2016-evolqg,
title = {EvolQG - An R package for evolutionary quantitative
genetics [version 3; referees: 2 approved, 1 approved with
reservations]},
author = {Diogo Melo and Guilherme Garcia and Alex Hubbe and Ana
Paula Assis and Gabriel Marroig},
journal = {F1000Research},
year = {2016},
volume = {4},
number = {925},
doi = {10.12688/f1000research.7082.3},
}
