Package: emBayes 0.1.6

Yuwen Liu

emBayes: Robust Bayesian Variable Selection via Expectation-Maximization

Variable selection methods have been extensively developed for analyzing highdimensional omics data within both the frequentist and Bayesian frameworks. This package provides implementations of the spike-and-slab quantile (group) LASSO which have been developed along the line of Bayesian hierarchical models but deeply rooted in frequentist regularization methods by utilizing Expectation–Maximization (EM) algorithm. The spike-and-slab quantile LASSO can handle data irregularity in terms of skewness and outliers in response variables, compared to its non-robust alternative, the spike-and-slab LASSO, which has also been implemented in the package. In addition, procedures for fitting the spike-and-slab quantile group LASSO and its non-robust counterpart have been implemented in the form of quantile/least-square varying coefficient mixed effect models for high-dimensional longitudinal data. The core module of this package is developed in 'C++'.

Authors:Yuwen Liu [aut, cre], Cen Wu [aut]

emBayes_0.1.6.tar.gz
emBayes_0.1.6.tar.gz(r-4.7-arm64)emBayes_0.1.6.tar.gz(r-4.7-x86_64)emBayes_0.1.6.tar.gz(r-4.6-arm64)emBayes_0.1.6.tar.gz(r-4.6-x86_64)
emBayes_0.1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
emBayes/json (API)

# Install 'emBayes' in R:
install.packages('emBayes', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • data - Simulated gene expression example data

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblascppopenmp

1.00 score 1 scripts 207 downloads 2 exports 11 dependencies

Last updated from:98ef0812da. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK132
linux-devel-x86_64OK134
source / vignettesOK159
linux-release-arm64OK133
linux-release-x86_64OK139
wasm-releaseOK131

Exports:cv.emBayesemBayes

Dependencies:codetoolsforeachglmnetiteratorslatticeMatrixRcppRcppArmadilloRcppEigenshapesurvival