Package: emBayes 0.1.6
emBayes: Robust Bayesian Variable Selection via Expectation-Maximization
Variable selection methods have been extensively developed for analyzing highdimensional omics data within both the frequentist and Bayesian frameworks. This package provides implementations of the spike-and-slab quantile (group) LASSO which have been developed along the line of Bayesian hierarchical models but deeply rooted in frequentist regularization methods by utilizing Expectation–Maximization (EM) algorithm. The spike-and-slab quantile LASSO can handle data irregularity in terms of skewness and outliers in response variables, compared to its non-robust alternative, the spike-and-slab LASSO, which has also been implemented in the package. In addition, procedures for fitting the spike-and-slab quantile group LASSO and its non-robust counterpart have been implemented in the form of quantile/least-square varying coefficient mixed effect models for high-dimensional longitudinal data. The core module of this package is developed in 'C++'.
Authors:
emBayes_0.1.6.tar.gz
emBayes_0.1.6.tar.gz(r-4.7-arm64)emBayes_0.1.6.tar.gz(r-4.7-x86_64)emBayes_0.1.6.tar.gz(r-4.6-arm64)emBayes_0.1.6.tar.gz(r-4.6-x86_64)
emBayes_0.1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
emBayes/json (API)
| # Install 'emBayes' in R: |
| install.packages('emBayes', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- data - Simulated gene expression example data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:98ef0812da. Checks:6 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 132 | ||
| linux-devel-x86_64 | OK | 134 | ||
| source / vignettes | OK | 159 | ||
| linux-release-arm64 | OK | 133 | ||
| linux-release-x86_64 | OK | 139 | ||
| wasm-release | OK | 131 |
Exports:cv.emBayesemBayes
Dependencies:codetoolsforeachglmnetiteratorslatticeMatrixRcppRcppArmadilloRcppEigenshapesurvival
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Robust Bayesian Variable Selection via Expectation-Maximization | emBayes-package |
| k-folds cross-validation for 'emBayes' | cv.emBayes |
| simulated gene expression example data | data |
| fit a model with given tuning parameters | emBayes |
| print an cv.emBayes result | print.cv.emBayes |
| print an emBayes result | print.emBayes |
