{
  "_id": "6ac783c3de46216d5edd14fb",
  "Package": "emBayes",
  "Type": "Package",
  "Title": "Robust Bayesian Variable Selection via Expectation-Maximization",
  "Version": "0.1.6",
  "Date": "2024-08-26",
  "Authors@R": "c( person(\"Yuwen\", \"Liu\", role = c(\"aut\", \"cre\") , email = \"yuwenliu9@gmail.com\"),\nperson(\"Cen\", \"Wu\", role = \"aut\"))",
  "Maintainer": "Yuwen Liu <yuwenliu9@gmail.com>",
  "Description": "Variable selection methods have been extensively developed\nfor analyzing highdimensional omics data within both the\nfrequentist and Bayesian frameworks. This package provides\nimplementations of the spike-and-slab quantile (group) LASSO\nwhich have been developed along the line of Bayesian\nhierarchical models but deeply rooted in frequentist\nregularization methods by utilizing Expectation–Maximization\n(EM) algorithm. The spike-and-slab quantile LASSO can handle\ndata irregularity in terms of skewness and outliers in response\nvariables, compared to its non-robust alternative, the\nspike-and-slab LASSO, which has also been implemented in the\npackage. In addition, procedures for fitting the spike-and-slab\nquantile group LASSO and its non-robust counterpart have been\nimplemented in the form of quantile/least-square varying\ncoefficient mixed effect models for high-dimensional\nlongitudinal data. The core module of this package is developed\nin 'C++'.",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-08 11:45:00 UTC",
    "User": "root"
  },
  "Author": "Yuwen Liu [aut, cre], Cen Wu [aut]",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2024-09-15 03:01:11 UTC",
  "RemoteUrl": "https://github.com/cran/emBayes",
  "RemoteRef": "HEAD",
  "RemoteSha": "98ef0812da2bef0674f171fb26de36714b6e36d0",
  "_user": "cran",
  "_type": "src",
  "_file": "emBayes_0.1.6.tar.gz",
  "_fileid": "https://r2.ropensci.org/f06359618932d3190883bccd11885736ed451b76d728ede229fcca0a9836a64b",
  "_filesize": 289519,
  "_sha256": "f06359618932d3190883bccd11885736ed451b76d728ede229fcca0a9836a64b",
  "_expires": "2027-01-16T11:51:29.000Z",
  "_created": "2026-10-08T11:45:00.000Z",
  "_published": "2026-10-08T11:51:31.867Z",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/37771655673",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 113294168225,
      "time": 142,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11547553424"
    },
    {
      "job": 113294168159,
      "time": 135,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11548133514"
    },
    {
      "job": 113294168352,
      "time": 136,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11548173385"
    },
    {
      "job": 113294168261,
      "time": 165,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11548472743"
    },
    {
      "job": 113293090095,
      "time": 171,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11548442059"
    },
    {
      "job": 113294168121,
      "time": 102,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11548482563"
    },
    {
      "job": 113294168251,
      "time": 191,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11548073699"
    },
    {
      "job": 113294168239,
      "time": 172,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11548058698"
    },
    {
      "job": 113294168226,
      "time": 337,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11547369184"
    },
    {
      "job": 113294168241,
      "time": 123,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11547513413"
    }
  ],
  "_upstream": "https://github.com/cran/emBayes",
  "_commit": {
    "id": "98ef0812da2bef0674f171fb26de36714b6e36d0",
    "author": "Yuwen Liu <yuwenliu9@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.6\n",
    "time": 1726369271
  },
  "_maintainer": {
    "name": "Yuwen Liu",
    "email": "yuwenliu9@gmail.com",
    "login": "yuwen-l",
    "linkedin": "in/yuwen-liu-5a8b9280",
    "description": "",
    "uuid": 66111190
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "glmnet",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "yuwen-l",
      "count": 1,
      "uuid": 66111190
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 630,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 326,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/emBayes"
  },
  "_searchresults": 1,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/emBayes.html",
    "extra/manual.pdf"
  ],
  "_realowner": "yuwen-l",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2023-05-20"
    },
    {
      "version": "0.1.1",
      "date": "2023-06-06"
    },
    {
      "version": "0.1.2",
      "date": "2023-08-07"
    },
    {
      "version": "0.1.4",
      "date": "2023-11-07"
    },
    {
      "version": "0.1.5",
      "date": "2024-03-29"
    },
    {
      "version": "0.1.6",
      "date": "2024-09-15"
    }
  ],
  "_exports": [
    "cv.emBayes",
    "emBayes"
  ],
  "_datasets": [
    {
      "name": "data",
      "title": "simulated gene expression example data",
      "object": "data",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "emBayes-package",
      "title": "Robust Bayesian Variable Selection via Expectation-Maximization",
      "topics": [
        "emBayes-package"
      ]
    },
    {
      "page": "cv.emBayes",
      "title": "k-folds cross-validation for 'emBayes'",
      "topics": [
        "cv.emBayes"
      ]
    },
    {
      "page": "data",
      "title": "simulated gene expression example data",
      "topics": [
        "data"
      ]
    },
    {
      "page": "emBayes",
      "title": "fit a model with given tuning parameters",
      "topics": [
        "emBayes"
      ]
    },
    {
      "page": "print.cv.emBayes",
      "title": "print an cv.emBayes result",
      "topics": [
        "print.cv.emBayes"
      ]
    },
    {
      "page": "print.emBayes",
      "title": "print an emBayes result",
      "topics": [
        "print.emBayes"
      ]
    }
  ],
  "_rundeps": [
    "codetools",
    "foreach",
    "glmnet",
    "iterators",
    "lattice",
    "Matrix",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "shape",
    "survival"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 1,
  "_indexed": false,
  "_nocasepkg": "embayes",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://yuwen-l.r-universe.dev/emBayes",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.6",
      "date": "2026-10-08T11:47:15.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0",
      "fileid": "https://r2.ropensci.org/aabfba0fb503f2926e42d82d1662026d116145447431e628164bbf138d3b77df",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37771655673"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.6",
      "date": "2026-10-08T11:47:09.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0",
      "fileid": "https://r2.ropensci.org/a77fa569aa0c4606c85d66fb22616995cbf968f5956bf9d14f55523597ecbd11",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37771655673"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.6",
      "date": "2026-10-08T11:47:13.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0",
      "fileid": "https://r2.ropensci.org/4b9aba70d8479a1820a2bcea78f4990cebc194343a86468c280dd4fc6689b206",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37771655673"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.6",
      "date": "2026-10-08T11:47:38.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0",
      "fileid": "https://r2.ropensci.org/a769e4d242a9937a9f5100a146ba6f68b08adefe112c4740e101d307b9560a0c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37771655673"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.6",
      "date": "2026-10-08T11:46:59.000Z",
      "arch": "emscripten",
      "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0",
      "fileid": "https://r2.ropensci.org/a06da6a8464c629975978b079d4c5146ab12b51a21e36aaa2ee31c6b584705ec",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37771655673"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.6",
      "date": "2026-10-08T11:47:50.000Z",
      "arch": "aarch64",
      "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0",
      "fileid": "https://r2.ropensci.org/f278ac3ddfc59e02a9a0379ba40a6a4cc24f69de7043d7ce52f6884d9e45b7b9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37771655673"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.6",
      "date": "2026-10-08T11:46:31.000Z",
      "arch": "x86_64",
      "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0",
      "fileid": "https://r2.ropensci.org/9364de6ca2fb17d91987e2f2138ff53e60a69750bcde6cc2164314c77ef64211",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37771655673"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.6",
      "date": "2026-10-08T11:50:16.000Z",
      "arch": "aarch64",
      "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0",
      "fileid": "https://r2.ropensci.org/778103bbc469af61a8ecefa76c8ad323b750c2382618379340a02063f8342641",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37771655673"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.6",
      "date": "2026-10-08T11:46:20.000Z",
      "arch": "x86_64",
      "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0",
      "fileid": "https://r2.ropensci.org/7213e7777db7286fe00c830523f4cb80e12542d214dde8f0740e6216c687b2d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37771655673"
    }
  ]
}