{ "_id": "6a2d24533efcd9bda42f65c2", "Package": "emBayes", "Type": "Package", "Title": "Robust Bayesian Variable Selection via Expectation-Maximization", "Version": "0.1.6", "Date": "2024-08-26", "Authors@R": "c( person(\"Yuwen\", \"Liu\", role = c(\"aut\", \"cre\") , email = \"yuwenliu9@gmail.com\"),\nperson(\"Cen\", \"Wu\", role = \"aut\"))", "Maintainer": "Yuwen Liu ", "Description": "Variable selection methods have been extensively developed\nfor analyzing highdimensional omics data within both the\nfrequentist and Bayesian frameworks. This package provides\nimplementations of the spike-and-slab quantile (group) LASSO\nwhich have been developed along the line of Bayesian\nhierarchical models but deeply rooted in frequentist\nregularization methods by utilizing Expectation–Maximization\n(EM) algorithm. The spike-and-slab quantile LASSO can handle\ndata irregularity in terms of skewness and outliers in response\nvariables, compared to its non-robust alternative, the\nspike-and-slab LASSO, which has also been implemented in the\npackage. In addition, procedures for fitting the spike-and-slab\nquantile group LASSO and its non-robust counterpart have been\nimplemented in the form of quantile/least-square varying\ncoefficient mixed effect models for high-dimensional\nlongitudinal data. The core module of this package is developed\nin 'C++'.", "License": "GPL-2", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-13 09:31:55 UTC", "User": "root" }, "Author": "Yuwen Liu [aut, cre], Cen Wu [aut]", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2024-09-15 03:01:11 UTC", "RemoteUrl": "https://github.com/cran/emBayes", "RemoteRef": "HEAD", "RemoteSha": "98ef0812da2bef0674f171fb26de36714b6e36d0", "MD5sum": "7a0067dcdfbc402ef1f9d09c008af4f3", "_user": "cran", "_type": "src", "_file": "emBayes_0.1.6.tar.gz", "_fileid": "f5b90d58719b1d3df6043c7167de0fa492b51ce763f9e54f8882b2ac06d43535", "_filesize": 293347, "_sha256": "f5b90d58719b1d3df6043c7167de0fa492b51ce763f9e54f8882b2ac06d43535", "_created": "2026-06-13T09:31:55.000Z", "_published": "2026-06-13T09:35:15.959Z", "_distro": "noble", "_jobs": [ { "job": 81180188641, "time": 132, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7609560079" }, { "job": 81180188651, "time": 134, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7609560718" }, { "job": 81180188644, "time": 133, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7609559881" }, { "job": 81180188645, "time": 139, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7609561211" }, { "job": 81180030845, "time": 159, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7609544379" }, { "job": 81180188633, "time": 131, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7609559558" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/27462870326", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/emBayes", "_commit": { "id": "98ef0812da2bef0674f171fb26de36714b6e36d0", "author": "Yuwen Liu ", "committer": "cran-robot ", "message": "version 0.1.6\n", "time": 1726369271 }, "_maintainer": { "name": "Yuwen Liu", "email": "yuwenliu9@gmail.com", "login": "yuwen-l", "linkedin": "in/yuwen-liu-5a8b9280", "description": "", "uuid": 66111190 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "Rcpp", "role": "Imports" }, { "package": "glmnet", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "yuwen-l", "count": 1, "uuid": 66111190 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 207, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/emBayes" }, "_searchresults": 1, "_topics": [ "openblas", "cpp", "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/emBayes.html", "manual.pdf" ], "_realowner": "yuwen-l", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2023-05-20" }, { "version": "0.1.1", "date": "2023-06-06" }, { "version": "0.1.2", "date": "2023-08-07" }, { "version": "0.1.4", "date": "2023-11-07" }, { "version": "0.1.5", "date": "2024-03-29" }, { "version": "0.1.6", "date": "2024-09-15" } ], "_exports": [ "cv.emBayes", "emBayes" ], "_datasets": [ { "name": "data", "title": "simulated gene expression example data", "object": "data", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "emBayes-package", "title": "Robust Bayesian Variable Selection via Expectation-Maximization", "topics": [ "emBayes-package" ] }, { "page": "cv.emBayes", "title": "k-folds cross-validation for 'emBayes'", "topics": [ "cv.emBayes" ] }, { "page": "data", "title": "simulated gene expression example data", "topics": [ "data" ] }, { "page": "emBayes", "title": "fit a model with given tuning parameters", "topics": [ "emBayes" ] }, { "page": "print.cv.emBayes", "title": "print an cv.emBayes result", "topics": [ "print.cv.emBayes" ] }, { "page": "print.emBayes", "title": "print an emBayes result", "topics": [ "print.emBayes" ] } ], "_rundeps": [ "codetools", "foreach", "glmnet", "iterators", "lattice", "Matrix", "Rcpp", "RcppArmadillo", "RcppEigen", "shape", "survival" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_score": 1, "_indexed": false, "_nocasepkg": "embayes", "_universes": [ "cran" ], "_indexurl": "https://yuwen-l.r-universe.dev/emBayes", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.6", "date": "2026-06-13T09:34:04.000Z", "distro": "noble", "arch": "aarch64", "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0", "fileid": "c98803a29097fdb0a6ac2e565f52a01cb58453b8a7b134ae89fce4b813565545", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27462870326" }, { "r": "4.7.0", "os": "linux", "version": "0.1.6", "date": "2026-06-13T09:34:07.000Z", "distro": "noble", "arch": "x86_64", "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0", "fileid": "d924448012d760e9c9de8466d471ac7fbca567f85e8375e9dd98e1b3ef1d29d3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27462870326" }, { "r": "4.6.0", "os": "linux", "version": "0.1.6", "date": "2026-06-13T09:34:04.000Z", "distro": "noble", "arch": "aarch64", "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0", "fileid": "d422965ccbe9e1e712aa650ea0a80c4889ac9330da011e8f9e36e679830fb0e9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27462870326" }, { "r": "4.6.0", "os": "linux", "version": "0.1.6", "date": "2026-06-13T09:34:11.000Z", "distro": "noble", "arch": "x86_64", "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0", "fileid": "054a80471a61becf5fd22624c9af31eaa74ef0ceed6fe1783fb7d1606ad33462", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27462870326" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.6", "date": "2026-06-13T09:34:26.000Z", "arch": "emscripten", "commit": "98ef0812da2bef0674f171fb26de36714b6e36d0", "fileid": "807e41126fe15452cf166c522d04f11131b7d9f343958f238c716fb71019ecd0", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27462870326" } ] }