Package: cosimmr 1.0.12

Emma Govan

cosimmr: Fast Fitting of Stable Isotope Mixing Models with Covariates

Fast fitting of Stable Isotope Mixing Models in R. Allows for the inclusion of covariates. Also has built-in summary functions and plot functions which allow for the creation of isospace plots. Variational Bayes is used to fit these models, methods as described in: Tran et al., (2021) <doi:10.48550/arXiv.2103.01327>.

Authors:Emma Govan [cre, aut], Andrew Parnell [aut], Ahmed Shalaby [ctb], Alan Inglis [ctb]

cosimmr_1.0.12.tar.gz
cosimmr_1.0.12.tar.gz(r-4.5-noble)cosimmr_1.0.12.tar.gz(r-4.4-noble)
cosimmr_1.0.12.tgz(r-4.4-emscripten)cosimmr_1.0.12.tgz(r-4.3-emscripten)
cosimmr.pdf |cosimmr.html
cosimmr/json (API)

# Install 'cosimmr' in R:
install.packages('cosimmr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/emmagovan/cosimmr/issues

Pkgdown:https://emmagovan.github.io

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
Datasets:

openblascppopenmpjags

2.30 score 7 scripts 566 downloads 5 exports 56 dependencies

Last updated 6 months agofrom:4137f173f6. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 28 2024
R-4.5-linux-x86_64OKNov 28 2024

Exports:cosimmr_ffvbcosimmr_loadposterior_predictiveprint.cosimmr_inputprior_viz

Dependencies:abindbackportsbayesplotbootcheckmateclicodacolorspacedistributionaldplyrfansifarvergenericsggnewscaleggplot2ggridgesgluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivpillarpkgconfigplyrposteriorR2jagsR2WinBUGSR6RColorBrewerRcppRcppArmadilloRcppDistreshape2rjagsrlangscalesstringistringrtensorAtibbletidyselectutf8vctrsviridisviridisLitewithr

Stable Isotope Mixing Models with Covariates in R using cosimmr

Rendered fromcosimmr.Rmdusingknitr::rmarkdownon Nov 28 2024.

Last update: 2024-06-01
Started: 2024-05-29

Quick start using cosimmr

Rendered fromcosimmr_quick_start.Rmdusingknitr::rmarkdownon Nov 28 2024.

Last update: 2024-06-01
Started: 2024-06-01