Package: cosimmr 1.0.12

Emma Govan

cosimmr: Fast Fitting of Stable Isotope Mixing Models with Covariates

Fast fitting of Stable Isotope Mixing Models in R. Allows for the inclusion of covariates. Also has built-in summary functions and plot functions which allow for the creation of isospace plots. Variational Bayes is used to fit these models, methods as described in: Tran et al., (2021) <doi:10.48550/arXiv.2103.01327>.

Authors:Emma Govan [cre, aut], Andrew Parnell [aut], Ahmed Shalaby [ctb], Alan Inglis [ctb]

cosimmr_1.0.12.tar.gz
cosimmr_1.0.12.tar.gz(r-4.5-noble)cosimmr_1.0.12.tar.gz(r-4.4-noble)
cosimmr_1.0.12.tgz(r-4.4-emscripten)cosimmr_1.0.12.tgz(r-4.3-emscripten)
cosimmr.pdf |cosimmr.html✨
cosimmr/json (API)

# Install 'cosimmr' in R:
install.packages('cosimmr', repos = 'https://cloud.r-project.org')

Bug tracker:https://github.com/emmagovan/cosimmr/issues0 issues

Pkgdown site:https://emmagovan.github.io

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
Datasets:

On CRAN:

Conda:

openblascppopenmpjags

2.30 score 529 downloads 5 exports 56 dependencies

Last updated 10 months agofrom:4137f173f6. Checks:3 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 28 2025
R-4.5-linux-x86_64OKMar 28 2025
R-4.4-linux-x86_64OKMar 28 2025

Exports:cosimmr_ffvbcosimmr_loadposterior_predictiveprint.cosimmr_inputprior_viz

Dependencies:abindbackportsbayesplotbootcheckmateclicodacolorspacedistributionaldplyrfansifarvergenericsggnewscaleggplot2ggridgesgluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivpillarpkgconfigplyrposteriorR2jagsR2WinBUGSR6RColorBrewerRcppRcppArmadilloRcppDistreshape2rjagsrlangscalesstringistringrtensorAtibbletidyselectutf8vctrsviridisviridisLitewithr

Stable Isotope Mixing Models with Covariates in R using cosimmr

Emma Govan and Andrew Parnell

Rendered fromcosimmr.Rmdusingknitr::rmarkdownon Mar 28 2025.

Last update: 2024-06-01
Started: 2024-05-29

Quick start using cosimmr

Emma Govan and Andrew Parnell

Rendered fromcosimmr_quick_start.Rmdusingknitr::rmarkdownon Mar 28 2025.

Last update: 2024-06-01
Started: 2024-06-01

Citation

To cite package ‘cosimmr’ in publications use:

Govan E, Parnell A (2024). cosimmr: Fast Fitting of Stable Isotope Mixing Models with Covariates. R package version 1.0.12, https://CRAN.R-project.org/package=cosimmr.

Corresponding BibTeX entry: 

  @Manual{,
    title = {cosimmr: Fast Fitting of Stable Isotope Mixing Models with
      Covariates},
    author = {Emma Govan and Andrew Parnell},
    year = {2024},
    note = {R package version 1.0.12},
    url = {https://CRAN.R-project.org/package=cosimmr},
  }