Package: cosimmr 1.0.12
Emma Govan
cosimmr: Fast Fitting of Stable Isotope Mixing Models with Covariates
Fast fitting of Stable Isotope Mixing Models in R. Allows for the inclusion of covariates. Also has built-in summary functions and plot functions which allow for the creation of isospace plots. Variational Bayes is used to fit these models, methods as described in: Tran et al., (2021) <doi:10.48550/arXiv.2103.01327>.
Authors:
cosimmr_1.0.12.tar.gz
cosimmr_1.0.12.tar.gz(r-4.5-noble)cosimmr_1.0.12.tar.gz(r-4.4-noble)
cosimmr_1.0.12.tgz(r-4.4-emscripten)cosimmr_1.0.12.tgz(r-4.3-emscripten)
cosimmr.pdf |cosimmr.html✨
cosimmr/json (API)
| # Install 'cosimmr' in R: |
| install.packages('cosimmr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/emmagovan/cosimmr/issues
Pkgdown site:https://emmagovan.github.io
- alligator_data - Alligator Data
- cladocera_data - Cladocera data from Galloway et al 2015.
- geese_data - Geese stable isotope mixing data set
- geese_data_day1 - A smaller version of the Geese stable isotope mixing data set
- iso_data - Isopod Data
- simmr_data_1 - A simple fake stable isotope mixing data set
- simmr_data_2 - A 3-isotope fake stable isotope mixing data set
- square_data - An artificial data set used to indicate effect of priors
Last updated 7 months agofrom:4137f173f6. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 28 2024 |
| R-4.5-linux-x86_64 | OK | Dec 28 2024 |
Exports:cosimmr_ffvbcosimmr_loadposterior_predictiveprint.cosimmr_inputprior_viz
Dependencies:abindbackportsbayesplotbootcheckmateclicodacolorspacedistributionaldplyrfansifarvergenericsggnewscaleggplot2ggridgesgluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivpillarpkgconfigplyrposteriorR2jagsR2WinBUGSR6RColorBrewerRcppRcppArmadilloRcppDistreshape2rjagsrlangscalesstringistringrtensorAtibbletidyselectutf8vctrsviridisviridisLitewithr
Stable Isotope Mixing Models with Covariates in R using cosimmr
Rendered fromcosimmr.Rmdusingknitr::rmarkdownon Dec 28 2024.Last update: 2024-06-01
Started: 2024-05-29
Quick start using cosimmr
Rendered fromcosimmr_quick_start.Rmdusingknitr::rmarkdownon Dec 28 2024.Last update: 2024-06-01
Started: 2024-06-01
