Package: chkptstanr 0.1.1
Donald Williams
chkptstanr: Checkpoint MCMC Sampling with 'Stan'
Fit Bayesian models in Stan <doi:10.18637/jss.v076.i01> with checkpointing, that is, the ability to stop the MCMC sampler at will, and then pick right back up where the MCMC sampler left off. Custom 'Stan' models can be fitted, or the popular package 'brms' <doi:10.18637/jss.v080.i01> can be used to generate the 'Stan' code. This package is fully compatible with the R packages 'brms', 'posterior', 'cmdstanr', and 'bayesplot'.
Authors:
chkptstanr_0.1.1.tar.gz
chkptstanr_0.1.1.tar.gz(r-4.5-noble)chkptstanr_0.1.1.tar.gz(r-4.4-noble)
chkptstanr_0.1.1.tgz(r-4.4-emscripten)chkptstanr_0.1.1.tgz(r-4.3-emscripten)
chkptstanr.pdf |chkptstanr.html✨
chkptstanr/json (API)
| # Install 'chkptstanr' in R: |
| install.packages('chkptstanr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:296171e959. Checks:OK: 1 NOTE: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 21 2024 |
| R-4.5-linux | NOTE | Oct 21 2024 |
Exports:chkpt_brmschkpt_setupchkpt_stancombine_chkpt_drawscreate_folderextract_chkpt_drawsextract_hmc_infoextract_stan_statemake_brmsfit
Dependencies:abindbackportsbayesplotBHbridgesamplingbrmsBrobdingnagcallrcheckmateclicodacodetoolscolorspacedescdigestdistributionaldplyrfansifarverfuturefuture.applygenericsggplot2ggridgesglobalsgluegridExtragtableinlineisobandlabelinglatticelifecyclelistenvloomagrittrMASSMatrixmatrixStatsmgcvmunsellmvtnormnleqslvnlmenumDerivparallellypillarpkgbuildpkgconfigplyrposteriorprocessxpsQuickJSRR6rbibutilsRColorBrewerRcppRcppEigenRcppParallelRdpackreshape2rlangrstanrstantoolsscalesStanHeadersstringistringrtensorAtibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| chkptstanr: Checkpoint MCMC Sampling with 'Stan' | chkptstanr-package |
| Checkpoint Sampling: brms | chkpt_brms |
| Checkpoint Setup | chkpt_setup |
| Checkpoint Sampling: Stan | chkpt_stan |
| Combine Checkpoint Draws | combine_chkpt_draws |
| Create Folder for Checkpointing | create_folder |
| Extract Draws from 'CmdStanMCMC' Objects | extract_chkpt_draws |
| Extract HMC Sampler Information | extract_hmc_info |
| Extract Stan State | extract_stan_state |
| Make 'brmsfit' Object | make_brmsfit |
| Print 'chkpt_brms' Objects | print.chkpt_brms |
| Print 'chkpt_setup' Object | print.chkpt_setup |
| Print 'chkpt_stan' Objects | print.chkpt_stan |