Overview | Example data | Basic Archipelago plot | Using colour themes | Fully customised plot | Output files | Summary
Package: archipelago 0.1.0
Dylan Lawless
archipelago: Visualising Variant Set Association Test Results
Provides a graphical method for joint visualisation of Variant Set Association Test (VSAT) results and individual variant association statistics. The Archipelago method assigns genomic coordinates to variant set statistics, allowing simultaneous display of variant-level and set-level signals in a unified plot. This supports interpretation of both collective and individual variant contributions in genetic association studies using variant aggregation approaches. For more see Lawless et al. (2026) <doi:10.1002/gepi.70025>.
Authors:
archipelago_0.1.0.tar.gz
archipelago_0.1.0.tar.gz(r-4.7-any)archipelago_0.1.0.tar.gz(r-4.6-any)
archipelago_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
archipelago/json (API)
| # Install 'archipelago' in R: |
| install.packages('archipelago', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- variant_pval - Example variant data
- vsat_pval - Example variant set data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:35912ad3ca. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 119 | ||
| source / vignettes | OK | 221 | ||
| linux-release-x86_64 | OK | 123 | ||
| wasm-release | OK | 130 |
Exports:archipelago_plot
Dependencies:clicpp11dplyrfarvergenericsggplot2gluegtableisobandlabelinglifecyclemagrittrpillarpkgconfigR6RColorBrewerrlangS7scalestibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Archipelago Plot | archipelago_plot |
| Example variant data | variant_pval |
| Example variant set data | vsat_pval |