Package: agRee 0.5-3

Dai Feng

agRee: Various Methods for Measuring Agreement

Bland-Altman plot and scatter plot with identity line for visualization and point and interval estimates for different metrics related to reproducibility/repeatability/agreement including the concordance correlation coefficient, intraclass correlation coefficient, within-subject coefficient of variation, smallest detectable difference, and mean normalized smallest detectable difference.

Authors:Dai Feng

agRee_0.5-3.tar.gz
agRee_0.5-3.tar.gz(r-4.5-noble)agRee_0.5-3.tar.gz(r-4.4-noble)
agRee_0.5-3.tgz(r-4.4-emscripten)agRee_0.5-3.tgz(r-4.3-emscripten)
agRee.pdf |agRee.html
agRee/json (API)

# Install 'agRee' in R:
install.packages('agRee', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

jagscpp

2.36 score 46 scripts 427 downloads 5 mentions 6 exports 31 dependencies

Last updated 5 years agofrom:c2be14f241. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 06 2024
R-4.5-linuxOKDec 06 2024

Exports:agree.cccagree.icc1agree.plotagree.sddagree.sddmagree.wscv

Dependencies:abindbootclicodagluelatticelifecyclelme4magrittrMASSMatrixMatrixModelsmcmcMCMCpackminqamiscFmvtnormnlmenloptrquantregR2jagsR2WinBUGSRcppRcppEigenrjagsrlangSparseMstringistringrsurvivalvctrs

Readme and manuals

Help Manual

Help pageTopics
Concordance Correlation Coefficientagree.ccc ccc.lognormalNormal.mcmc ccc.mm ccc.mvn.mcmc ccc.mvt.mcmc ccc.nonpara.bootstrap ccc.nonpara.jackknife
Intraclass correlation coefficient for one-way random anova modelagree.icc1 icc1.sf
Visualize the Agreement of Ratings among Different Ratersagree.plot
Smallest Detectable Differenceagree.sdd
Mean Normalized Smallest Detectable Differenceagree.sddm
Within-subject Coefficient of Variationagree.wscv wscv.delta wscv.vst
Ratings of Different JudgesjudgeRatings
Total Lesion BurdenlesionBurden lesionBurden.G lesionBurden.M
PET Total Volume of Distributionamygdala brainStem cerebellum petVT