Package: afmToolkit 0.0.1
Rafael Benitez
afmToolkit: Functions for Atomic Force Microscope Force-Distance Curves Analysis
Set of functions for analyzing Atomic Force Microscope (AFM) force-distance curves. It allows to obtain the contact and unbinding points, perform the baseline correction, estimate the Young's modulus, fit up to two exponential decay function to a stress-relaxation / creep experiment, obtain adhesion energies. These operations can be done either over a single F-d curve or over a set of F-d curves in batch mode.
Authors:
afmToolkit_0.0.1.tar.gz
afmToolkit_0.0.1.tar.gz(r-4.5-noble)afmToolkit_0.0.1.tar.gz(r-4.4-noble)
afmToolkit_0.0.1.tgz(r-4.4-emscripten)afmToolkit_0.0.1.tgz(r-4.3-emscripten)
afmToolkit.pdf |afmToolkit.html✨
afmToolkit/json (API)
# Install 'afmToolkit' in R: |
install.packages('afmToolkit', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- batchExperiment - Example of an afmexperiment data class.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 years agofrom:36158a057d. Checks:OK: 1 NOTE: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 01 2024 |
R-4.5-linux | NOTE | Dec 01 2024 |
Exports:afmAdhesionEnergyafmBaselineCorrectionafmContactPointafmdataafmDetachPointafmExpDecayafmexperimentafmExtractafmIndentationafmReadJPKafmReadJPKFolderafmReadVeecoafmReadVeecoFolderafmYoungModulusafmZeroPointSlopeappend.afmdatais.afmdatais.afmexperimentwindowedFit
Dependencies:assertthatclicolorspaceDBIdplyrfansifarvergenericsggplot2gluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Adhesion Energy | afmAdhesionEnergy |
Performs a baseline correction to an AFM F-z curve | afmBaselineCorrection |
Contact point | afmContactPoint |
AFM data | afmdata |
Detach point | afmDetachPoint |
Exponential decay fit | afmExpDecay |
AFM experiment | afmexperiment |
Extract computed parameters from an afmexperiment | afmExtract |
afmIndentation | afmIndentation |
Read Nanowizard JPK ascii file | afmReadJPK |
Read all Nanowizard JPK ascii files in a folder | afmReadJPKFolder |
Read Bruke Nanoscope Veeco ascii file | afmReadVeeco |
Read all Bruke Nanoscope Veeco ascii files in a folder | afmReadVeecoFolder |
afmYoungModulus | afmYoungModulus |
Zero Force Point and Slope | afmZeroPointSlope |
Append to an 'afmdata' list. | append.afmdata |
Example of an afmexperiment data class. | batchExperiment |
Afmdata check. | is.afmdata |
Afmexperiment check. | is.afmexperiment |
Plot an afmdata object | plot.afmdata |
Summary of an 'afmdata' class object. | summary.afmdata |
Linear fit in a running window | windowedFit |