Package: afmToolkit 0.0.1
Rafael Benitez
afmToolkit: Functions for Atomic Force Microscope Force-Distance Curves Analysis
Set of functions for analyzing Atomic Force Microscope (AFM) force-distance curves. It allows to obtain the contact and unbinding points, perform the baseline correction, estimate the Young's modulus, fit up to two exponential decay function to a stress-relaxation / creep experiment, obtain adhesion energies. These operations can be done either over a single F-d curve or over a set of F-d curves in batch mode.
Authors:
afmToolkit_0.0.1.tar.gz
afmToolkit_0.0.1.tar.gz(r-4.5-noble)afmToolkit_0.0.1.tar.gz(r-4.4-noble)
afmToolkit_0.0.1.tgz(r-4.4-emscripten)afmToolkit_0.0.1.tgz(r-4.3-emscripten)
afmToolkit.pdf |afmToolkit.html✨
afmToolkit/json (API)
| # Install 'afmToolkit' in R: |
| install.packages('afmToolkit', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- batchExperiment - Example of an afmexperiment data class.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:36158a057d. Checks:OK: 1 NOTE: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 02 2024 |
| R-4.5-linux | NOTE | Sep 02 2024 |
Exports:afmAdhesionEnergyafmBaselineCorrectionafmContactPointafmdataafmDetachPointafmExpDecayafmexperimentafmExtractafmIndentationafmReadJPKafmReadJPKFolderafmReadVeecoafmReadVeecoFolderafmYoungModulusafmZeroPointSlopeappend.afmdatais.afmdatais.afmexperimentwindowedFit
Dependencies:assertthatclicolorspaceDBIdplyrfansifarvergenericsggplot2gluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Adhesion Energy | afmAdhesionEnergy |
| Performs a baseline correction to an AFM F-z curve | afmBaselineCorrection |
| Contact point | afmContactPoint |
| AFM data | afmdata |
| Detach point | afmDetachPoint |
| Exponential decay fit | afmExpDecay |
| AFM experiment | afmexperiment |
| Extract computed parameters from an afmexperiment | afmExtract |
| afmIndentation | afmIndentation |
| Read Nanowizard JPK ascii file | afmReadJPK |
| Read all Nanowizard JPK ascii files in a folder | afmReadJPKFolder |
| Read Bruke Nanoscope Veeco ascii file | afmReadVeeco |
| Read all Bruke Nanoscope Veeco ascii files in a folder | afmReadVeecoFolder |
| afmYoungModulus | afmYoungModulus |
| Zero Force Point and Slope | afmZeroPointSlope |
| Append to an 'afmdata' list. | append.afmdata |
| Example of an afmexperiment data class. | batchExperiment |
| Afmdata check. | is.afmdata |
| Afmexperiment check. | is.afmexperiment |
| Plot an afmdata object | plot.afmdata |
| Summary of an 'afmdata' class object. | summary.afmdata |
| Linear fit in a running window | windowedFit |