Package: VIProDesign 0.1.0

Tatsiana Bylund

VIProDesign: A Comprehensive Tool for Protein Design

Provides tools for designing virus protein panels through sequence clustering and protein sequence analysis. The package includes functionality for filtering sequences, removing redundancy, identifying outliers, clustering sequences, and calculating entropy to evaluate clustering quality. A publication describing these methods is in preparation and will be added once available.

Authors:Tatsiana Bylund [aut, cre]

VIProDesign_0.1.0.tar.gz
VIProDesign_0.1.0.tar.gz(r-4.7-any)VIProDesign_0.1.0.tar.gz(r-4.6-any)
VIProDesign_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
VIProDesign/json (API)
NEWS

# Install 'VIProDesign' in R:
install.packages('VIProDesign', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 scripts 140 downloads 5 exports 55 dependencies

Last updated from:3f88c1db2b. Checks:4 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK121
source / vignettesOK202
linux-release-x86_64OK128
wasm-releaseOK113

Exports:entropy_RRfilter_sequencesphyl_tree_cluster_dbscanphyl_tree_distance_krun_VIProDesign

Dependencies:apeBiocGenericsBiostringscliclustercowplotcpp11crayondata.tableDBIdbscanDECIPHERdigestdplyrfANCOVAfarvergenericsggplot2gluegtableIRangesisobandlabelinglatticelifecyclelubridatemagrittrnlmepathviewrpillarpkgconfigpurrrR.matlabR.methodsS3R.ooR.utilsR6RColorBrewerRcpprlangS4VectorsS7scalesSeqinfostringistringrtibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithrXVector