Package: VDAP 2.0.0

Cody Moore

VDAP: Peptide Array Analysis Tools

Analyze Peptide Array Data and characterize peptide sequence space. Allows for high level visualization of global signal, Quality control based on replicate correlation and/or relative Kd, calculation of peptide Length/Charge/Kd parameters, Hits selection based on RFU Signal, and amino acid composition/basic motif recognition with RFU signal weighting. Basic signal trends can be used to generate peptides that follow the observed compositional trends.

Authors:Cody Moore

VDAP_2.0.0.tar.gz
VDAP_2.0.0.zip(r-4.7-any)VDAP_2.0.0.zip(r-4.6-any)
VDAP_2.0.0.tar.gz(r-4.7-any)VDAP_2.0.0.tar.gz(r-4.6-any)
VDAP_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
VDAP/json (API)

# Install 'VDAP' in R:
install.packages('VDAP', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.15 score 14 scripts 240 downloads 17 exports 78 dependencies

Last updated from:b001b5399e. Checks:6 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK147
source / vignettesOK234
linux-releaseOK144
windows-develOK103
windows-releaseOK98
wasm-releaseOK98

Exports:aaDistaaStructAttribDupsgenPephitSelKdAlcScanQCKdQConresSepvComp.lvComp.lcvFormatvMotif.lvMotif.lcvSep

Dependencies:abindbackportsbootbroomcarcarDataclicodetoolscolorspacecowplotcpp11DerivdoBydplyrdrcfarverforecastFormulafracdiffgenericsggplot2gluegtablegtoolsisobandlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmgcvminqamodelrmultcompmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplotrixplyrpurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2rlangS7sandwichscalesSparseMstringistringrsurvivalTH.datatibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo