Package: UnifiedDoseFinding 0.1.10

Chia-Wei Hsu

UnifiedDoseFinding: Dose-Finding Methods for Non-Binary Outcomes

In many phase I trials, the design goal is to find the dose associated with a certain target toxicity rate. In some trials, the goal can be to find the dose with a certain weighted sum of rates of various toxicity grades. For others, the goal is to find the dose with a certain mean value of a continuous response. This package provides the setup and calculations needed to run a dose-finding trial with non-binary endpoints and performs simulations to assess design’s operating characteristics under various scenarios. Three dose finding designs are included in this package: unified phase I design (Ivanova et al. (2009) <doi:10.1111/j.1541-0420.2008.01045.x>), Quasi-CRM/Robust-Quasi-CRM (Yuan et al. (2007) <doi:10.1111/j.1541-0420.2006.00666.x>, Pan et al. (2014) <doi:10.1371/journal.pone.0098147>) and generalized BOIN design (Mu et al. (2018) <doi:10.1111/rssc.12263>). The toxicity endpoints can be handled with these functions including equivalent toxicity score (ETS), total toxicity burden (TTB), general continuous toxicity endpoints, with incorporating ordinal grade toxicity information into dose-finding procedure. These functions allow customization of design characteristics to vary sample size, cohort sizes, target dose-limiting toxicity (DLT) rates, discrete or continuous toxicity score, and incorporate safety and/or stopping rules.

Authors:Chia-Wei Hsu, Haitao Pan, Rongji Mu

UnifiedDoseFinding_0.1.10.tar.gz
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UnifiedDoseFinding_0.1.10.tgz(r-4.4-emscripten)UnifiedDoseFinding_0.1.10.tgz(r-4.3-emscripten)
UnifiedDoseFinding.pdf |UnifiedDoseFinding.html
UnifiedDoseFinding/json (API)

# Install 'UnifiedDoseFinding' in R:
install.packages('UnifiedDoseFinding', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 319 downloads 18 exports 0 dependencies

Last updated 2 years agofrom:8ea2ecfdd6. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 16 2024
R-4.5-linuxOKNov 16 2024

Exports:get_oc_gBOIN_continuousget_oc_gBOIN_TBget_oc_Ivanova_binaryget_oc_Ivanova_continuousget_oc_QuasiBOINget_oc_RQ_CRMnext_gBOIN_continuousnext_gBOIN_TBnext_Ivanova_binarynext_Ivanova_continuousnext_QuasiBOINnext_RQ_CRMselect_mtd_gBOIN_continuousselect_mtd_gBOIN_TBselect_mtd_Ivanova_binaryselect_mtd_Ivanova_continuousselect_mtd_QuasiBOINselect_mtd_RQ_CRM

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
Generate operating characteristics for finding the maximum tolerated dose (MTD) using gBOIN designget_oc_gBOIN_continuous
Generate operating characteristics for finding the maximum tolerated dose (MTD) defined by Toxicity Burden (TB) Score using gBOIN designget_oc_gBOIN_TB
Generate operating characteristics for finding the maximum tolerated dose (MTD) of binary endpoint using design by Ivanova et al (2009)get_oc_Ivanova_binary
Generate operating characteristics for finding the maximum tolerated dose (MTD) of continuous endpoint using design by Ivanova et al (2009)get_oc_Ivanova_continuous
Generate operating characteristics for finding the maximum tolerated dose (MTD) defined by Equivalent Score (ET) using Quasi-CRM design using gBOINget_oc_QuasiBOIN
Generate operating characteristics for finding the maximum tolerated dose (MTD) defined by Equivalent Score (ET) using Quasi-CRM designget_oc_RQ_CRM
Determine the dose for the next cohort of new patients for single-agent trials that aim to find a maximum tolerated dose (MTD) using gBOIN designnext_gBOIN_continuous
Determine the dose for the next cohort of new patients for single-agent trials that aim to find a maximum tolerated dose (MTD) defined by Toxicity Burden (TB) Score using gBOIN designnext_gBOIN_TB
Determine the dose for the next cohort of new patients of binary endpoint using design by Ivanova et al (2009)next_Ivanova_binary
Determine the dose for the next cohort of new patients using Inanova designnext_Ivanova_continuous
Determine the dose for the next cohort of new patients based on equivalent score (ET)-defined target using gBOIN designnext_QuasiBOIN
Determine the dose for the next cohort of new patients using Quasi-CRM designnext_RQ_CRM
Select the maximum tolerated dose (MTD) for single agent trials using gBOIN designselect_mtd_gBOIN_continuous
Select the maximum tolerated dose (MTD) defined by Toxicity Burden (TB) Score for single agent trials using gBOIN designselect_mtd_gBOIN_TB
Select the maximum tolerated dose (MTD) of binary endpoint for single agent trials using design by Ivanova et al (2009)select_mtd_Ivanova_binary
Select the maximum tolerated dose (MTD) for single agent trials of continuous endpoint using design by Ivanova et al (2009)select_mtd_Ivanova_continuous
Select the maximum tolerated dose (MTD)-defined by equivalent score (ET) using gBOIN designselect_mtd_QuasiBOIN
Select the maximum tolerated dose (MTD) using Quasi-CRM designselect_mtd_RQ_CRM