Package: Umatrix 4.0.1
Jorn Lotsch
Umatrix: Visualization of Structures in High-Dimensional Data
By gaining the property of emergence through self-organization, the enhancement of SOMs(self organizing maps) is called Emergent SOM (ESOM). The result of the projection by ESOM is a grid of neurons which can be visualised as a three dimensional landscape in form of the Umatrix. Further details can be found in the referenced publications (see url). This package offers tools for calculating and visualising the ESOM as well as Umatrix, Pmatrix and UStarMatrix. All the functionality is also available through graphical user interfaces implemented in 'shiny'. Based on the recognized data structures, the method can be used to generate new data.
Authors:
Umatrix_4.0.1.tar.gz
Umatrix_4.0.1.tar.gz(r-4.5-noble)Umatrix_4.0.1.tar.gz(r-4.4-noble)
Umatrix_4.0.1.tgz(r-4.4-emscripten)Umatrix_4.0.1.tgz(r-4.3-emscripten)
Umatrix.pdf |Umatrix.html✨
Umatrix/json (API)
| # Install 'Umatrix' in R: |
| install.packages('Umatrix', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 months agofrom:e35c5d194c. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 18 2024 |
| R-4.5-linux-x86_64 | OK | Dec 18 2024 |
Exports:calculate_Delauny_radiusesomTraingenerate_dataiClassificationiEsomTrainiUmapIslandiUstarmatrixplotMatrixpmatrixForEsomshowMatrix3DumatrixForEsomustarmatrixCalc
Dependencies:abindAdaptGaussaskpassbase64encbslibcachemclicolorspacecommonmarkcpp11crayoncrosstalkcurldata.tableDataVisualizationsdeldirdigestdotCall64dplyrevaluatefansifarverfastmapfieldsfontawesomefsgenericsgeometryggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelinproglpSolvemagicmagrittrmapsMASSMatrixmemoisemgcvmimemunsellnlmeopensslpdistpillarpkgconfigplotlyplyrpngpracmapromisespurrrR6rappdirsRColorBrewerRcppRcppArmadilloRcppProgressreshape2rlangrmarkdownsassscalesshinyshinyjssourcetoolsspspamstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Umatrix-package | Umatrix-package |
| Best matching units (BMU) of Hepta from FCPS (Fundamental Clustering Problem Suite) | BMUHepta |
| Calculate the Delauny graph based radius | calculate_Delauny_radius |
| Train an ESOM (emergent self organizing map) and project data | esomTrain |
| Generative ESOM | generate_data |
| Hepta from FCPS (Fundamental Clustering Problem Suite) | Hepta |
| GUI for manual classification | iClassification |
| iEsomTrain | iEsomTrain |
| iUmapIsland | iUmapIsland |
| iUstarmatrix | iUstarmatrix |
| plotMatrix | plotMatrix |
| pmatrixForEsom | pmatrixForEsom |
| showMatrix3D | showMatrix3D |
| umatrixForEsom | umatrixForEsom |
| ustarmatrixCalc | ustarmatrixCalc |