{
  "_id": "6a10507dacfb0bcc41ca115e",
  "Package": "Umatrix",
  "Type": "Package",
  "Title": "Visualization of Structures in High-Dimensional Data",
  "Version": "4.0.2",
  "Date": "2025-05-28",
  "Authors@R": "c(person(given = \"Florian\", family = \"Lerch\", role = \"aut\"),\nperson(given = \"Michael\", family = \"Thrun\", role = \"aut\"),\nperson(given = \"Felix\", family = \"Pape\", role = \"ctb\"),\nperson(given = \"Jorn\", family = \"Lotsch\", role = c(\"aut\", \"cre\"), email = \"j.lotsch@em.uni-frankfurt.de\"),\nperson(given = \"Raphael\", family = \"Paebst\", role = \"ctb\"),\nperson(given = \"Alfred\", family = \"Ultsch\", role = \"aut\"))",
  "Description": "By gaining the property of emergence through\nself-organization, the enhancement of SOMs(self organizing\nmaps) is called Emergent SOM (ESOM). The result of the\nprojection by ESOM is a grid of neurons which can be visualised\nas a three dimensional landscape in form of the Umatrix.\nFurther details can be found in the referenced publications\n(see url). This package offers tools for calculating and\nvisualising the ESOM as well as Umatrix, Pmatrix and\nUStarMatrix. All the functionality is also available through\ngraphical user interfaces implemented in 'shiny'. Based on the\nrecognized data structures, the method can be used to generate\nnew data.",
  "License": "GPL-3",
  "URL": "http://wscg.zcu.cz/wscg2016/short/A43-full.pdf",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-10 05:28:51 UTC",
    "User": "root"
  },
  "Author": "Florian Lerch [aut], Michael Thrun [aut], Felix Pape [ctb],\nJorn Lotsch [aut, cre], Raphael Paebst [ctb], Alfred Ultsch\n[aut]",
  "Maintainer": "Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2025-05-28 12:40:02 UTC",
  "RemoteUrl": "https://github.com/cran/Umatrix",
  "RemoteRef": "HEAD",
  "RemoteSha": "7e75cb55dabaea0884dcfda3e67a04777d38aa3a",
  "MD5sum": "0929d762e43267b1c3366318ec332baf",
  "_user": "cran",
  "_type": "src",
  "_file": "Umatrix_4.0.2.tar.gz",
  "_fileid": "6582893fbad543c2525213e41ed17885490ff722a1b20118e187843aa813c959",
  "_filesize": 194338,
  "_sha256": "6582893fbad543c2525213e41ed17885490ff722a1b20118e187843aa813c959",
  "_created": "2026-05-10T05:28:51.000Z",
  "_published": "2026-05-22T12:47:57.887Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77382229933,
      "time": 174,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6901244221"
    },
    {
      "job": 77382229799,
      "time": 185,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6901245595"
    },
    {
      "job": 77382229865,
      "time": 166,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6901243331"
    },
    {
      "job": 77382230298,
      "time": 188,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6901246516"
    },
    {
      "job": 77382229397,
      "time": 254,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6901225005"
    },
    {
      "job": 77382228944,
      "time": 158,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7160832133"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/25620727921",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/Umatrix",
  "_commit": {
    "id": "7e75cb55dabaea0884dcfda3e67a04777d38aa3a",
    "author": "Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 4.0.2\n",
    "time": 1748436002
  },
  "_maintainer": {
    "name": "Jorn Lotsch",
    "email": "j.lotsch@em.uni-frankfurt.de"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "shinyjs",
      "role": "Imports"
    },
    {
      "package": "reshape2",
      "role": "Imports"
    },
    {
      "package": "fields",
      "role": "Imports"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "png",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "grid",
      "role": "Imports"
    },
    {
      "package": "abind",
      "role": "Imports"
    },
    {
      "package": "deldir",
      "role": "Imports"
    },
    {
      "package": "geometry",
      "role": "Imports"
    },
    {
      "package": "pdist",
      "role": "Imports"
    },
    {
      "package": "AdaptGauss",
      "role": "Imports"
    },
    {
      "package": "DataVisualizations",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "rgl",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-22",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "4.0.2",
      "date": "2025-05-28"
    }
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "slerch",
      "count": 4,
      "uuid": 8900961
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 902,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Umatrix"
  },
  "_mentions": 6,
  "_searchresults": 13,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/Umatrix.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "3.0",
      "date": "2017-12-12"
    },
    {
      "version": "3.1",
      "date": "2017-12-18"
    },
    {
      "version": "3.3",
      "date": "2020-02-12"
    },
    {
      "version": "3.4",
      "date": "2023-06-14"
    },
    {
      "version": "3.4.1",
      "date": "2023-11-25"
    },
    {
      "version": "4.0",
      "date": "2024-04-25"
    },
    {
      "version": "4.0.1",
      "date": "2024-08-17"
    },
    {
      "version": "4.0.2",
      "date": "2025-05-28"
    }
  ],
  "_exports": [
    "calculate_Delauny_radius",
    "esomTrain",
    "generate_data",
    "iClassification",
    "iEsomTrain",
    "iUmapIsland",
    "iUstarmatrix",
    "plotMatrix",
    "pmatrixForEsom",
    "showMatrix3D",
    "umatrixForEsom",
    "ustarmatrixCalc"
  ],
  "_datasets": [
    {
      "name": "BMUHepta",
      "title": "Best matching units (BMU) of Hepta from FCPS (Fundamental Clustering Problem Suite)",
      "object": "BMUHepta",
      "file": "BMUHepta.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "BMkey",
        "BMLineCoords",
        "BMColCoords"
      ],
      "rows": 212,
      "table": true,
      "tojson": true
    },
    {
      "name": "Hepta",
      "title": "Hepta from FCPS (Fundamental Clustering Problem Suite)",
      "object": "Hepta",
      "file": "Hepta.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "Umatrix-package",
      "title": "Umatrix-package",
      "topics": [
        "Umatrix-package"
      ]
    },
    {
      "page": "BMUHepta",
      "title": "Best matching units (BMU) of Hepta from FCPS (Fundamental Clustering Problem Suite)",
      "topics": [
        "BMUHepta"
      ]
    },
    {
      "page": "calculate_Delauny_radius",
      "title": "Calculate the Delauny graph based radius",
      "topics": [
        "calculate_Delauny_radius"
      ]
    },
    {
      "page": "esomTrain",
      "title": "Train an ESOM (emergent self organizing map) and project data",
      "topics": [
        "esomTrain"
      ]
    },
    {
      "page": "generate_data",
      "title": "Generative ESOM",
      "topics": [
        "generate_data"
      ]
    },
    {
      "page": "Hepta",
      "title": "Hepta from FCPS (Fundamental Clustering Problem Suite)",
      "topics": [
        "Hepta"
      ]
    },
    {
      "page": "iClassification",
      "title": "GUI for manual classification",
      "topics": [
        "iClassification"
      ]
    },
    {
      "page": "iEsomTrain",
      "title": "iEsomTrain",
      "topics": [
        "iEsomTrain"
      ]
    },
    {
      "page": "iUmapIsland",
      "title": "iUmapIsland",
      "topics": [
        "iUmapIsland"
      ]
    },
    {
      "page": "iUstarmatrix",
      "title": "iUstarmatrix",
      "topics": [
        "iUstarmatrix"
      ]
    },
    {
      "page": "plotMatrix",
      "title": "plotMatrix",
      "topics": [
        "plotMatrix"
      ]
    },
    {
      "page": "pmatrixForEsom",
      "title": "pmatrixForEsom",
      "topics": [
        "pmatrixForEsom"
      ]
    },
    {
      "page": "showMatrix3D",
      "title": "showMatrix3D",
      "topics": [
        "showMatrix3D"
      ]
    },
    {
      "page": "umatrixForEsom",
      "title": "umatrixForEsom",
      "topics": [
        "umatrixForEsom"
      ]
    },
    {
      "page": "ustarmatrixCalc",
      "title": "ustarmatrixCalc",
      "topics": [
        "ustarmatrixCalc"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "AdaptGauss",
    "askpass",
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "cpp11",
    "crosstalk",
    "curl",
    "data.table",
    "DataVisualizations",
    "deldir",
    "digest",
    "dotCall64",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "fields",
    "fontawesome",
    "fs",
    "generics",
    "geometry",
    "ggplot2",
    "ggrepel",
    "glue",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "linprog",
    "lpSolve",
    "magic",
    "magrittr",
    "maps",
    "memoise",
    "mime",
    "openssl",
    "otel",
    "pdist",
    "pillar",
    "pkgconfig",
    "plotly",
    "plyr",
    "png",
    "pracma",
    "promises",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppParallel",
    "RcppProgress",
    "reshape2",
    "rlang",
    "rmarkdown",
    "S7",
    "sass",
    "scales",
    "shiny",
    "shinyjs",
    "sourcetools",
    "sp",
    "spam",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xtable",
    "yaml"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 1.8920946026904804,
  "_indexed": true,
  "_nocasepkg": "umatrix",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "4.0.2",
      "date": "2026-05-10T05:31:22.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "7e75cb55dabaea0884dcfda3e67a04777d38aa3a",
      "fileid": "89820dfb3602c646cb6d5f4d77d3bd40abf51f49888c417339f3e3d7110a307a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25620727921"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "4.0.2",
      "date": "2026-05-10T05:31:27.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "7e75cb55dabaea0884dcfda3e67a04777d38aa3a",
      "fileid": "57484524c9587d7e1cc68e00673dc9f14eccd5a972bfaae1637c6bcd0ed7d5d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25620727921"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "4.0.2",
      "date": "2026-05-10T05:31:17.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "7e75cb55dabaea0884dcfda3e67a04777d38aa3a",
      "fileid": "21c99004367c75392abb7ada1ae770ba4c492540c4a30c32ef734f27a325c72f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25620727921"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "4.0.2",
      "date": "2026-05-10T05:31:34.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "7e75cb55dabaea0884dcfda3e67a04777d38aa3a",
      "fileid": "fa2369c22cf5f76516e92eb32ba6dffc92bbd1fa5f49be45f0f4c71a12209165",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25620727921"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "4.0.2",
      "date": "2026-05-22T12:47:15.000Z",
      "arch": "emscripten",
      "commit": "7e75cb55dabaea0884dcfda3e67a04777d38aa3a",
      "fileid": "f46713890c0e8c4f5f92c3858ae059e11d62df6861b70cba824c41df467b3167",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25620727921"
    }
  ]
}