Package: Thresher 1.1.4
![](https://r-universe.dev/static/nobody.jpg)
Kevin R. Coombes
Thresher: Threshing and Reaping for Principal Components
Defines the classes used to identify outliers (threshing) and compute the number of significant principal components and number of clusters (reaping) in a joint application of PCA and hierarchical clustering. See Wang et al., 2018, <doi:10.1186/s12859-017-1998-9>.
Authors:
Thresher_1.1.4.tar.gz
Thresher_1.1.4.tar.gz(r-4.5-noble)Thresher_1.1.4.tar.gz(r-4.4-noble)
Thresher_1.1.4.tgz(r-4.4-emscripten)Thresher_1.1.4.tgz(r-4.3-emscripten)
Thresher.pdf |Thresher.html✨
Thresher/json (API)
NEWS
# Install 'Thresher' in R: |
install.packages('Thresher', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://r-forge.r-project.org/projects/oompa
Last updated 4 months agofrom:0ad12905a8. Checks:OK: 1 NOTE: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 27 2024 |
R-4.5-linux | NOTE | Aug 27 2024 |
Exports:bestMetriccountAgreementgetColorsgetSplitgetStylesheatimagelabelAccuracylabelMatchermakeFiguresmatchLabelsplotReaperremapscatterscreeplotSimThresherThresherunitize
Dependencies:ade4BiobaseBiocGenericschangepointClassDiscoveryclueclustercolorspacecpmkernlablatticeMASSmclustmovMFoompaBaseoompaDataPCDimensionpixmapRcppRcppArmadilloskmeansslamspzoo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Generic Methods in the Thresher package | getColors getColors,ANY-method getSplit getSplit,ANY-method getStyles getStyles,ANY-method heat heat,ANY-method makeFigures makeFigures,ANY-method scatter scatter,ANY-method |
Match Arbitrary Class Assignments Across Methods | bestMetric countAgreement labelAccuracy labelMatcher matchLabels remap |
Class '"Reaper"' | getColors,Reaper-method getSplit,Reaper-method getStyles,Reaper-method makeFigures,Reaper-method Reaper Reaper-class |
Class '"SignalSet"' | SignalSet SignalSet-class |
Class '"SimThresher"' | image,SimThresher-method makeFigures,SimThresher-method SimThresher SimThresher-class |
Class Unions | fit or miss-class number or miss-class |
Class '"Thresher"' | getColors,Thresher-method getSplit,Thresher-method getStyles,Thresher-method heat,Thresher-method makeFigures,Thresher-method plot,Thresher,missing-method scatter,Thresher-method screeplot,Thresher-method Thresher Thresher-class |
Thresher and Reaper Simulated Data | savedReap savedSims sigma Thresher-data |
Convert a Vector to Unit Length | unitize |