Package: Thresher 1.1.5
Kevin R. Coombes
Thresher: Threshing and Reaping for Principal Components
Defines the classes used to identify outliers (threshing) and compute the number of significant principal components and number of clusters (reaping) in a joint application of PCA and hierarchical clustering. See Wang et al., 2018, <doi:10.1186/s12859-017-1998-9>.
Authors:
Thresher_1.1.5.tar.gz
Thresher_1.1.5.tar.gz(r-4.7-any)Thresher_1.1.5.tar.gz(r-4.6-any)
Thresher_1.1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Thresher/json (API)
| # Install 'Thresher' in R: |
| install.packages('Thresher', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://r-forge.r-project.org/projects/oompa
Datasets:
Last updated from:7eae3e71d0. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 175 | ||
| source / vignettes | OK | 178 | ||
| linux-release-x86_64 | OK | 127 | ||
| wasm-release | OK | 103 |
Exports:bestMetriccountAgreementgetColorsgetSplitgetStylesheatimagelabelAccuracylabelMatchermakeFiguresmatchLabelsplotReaperremapscatterscreeplotSimThresherThresherunitize
Dependencies:ade4BiobaseBiocGenericschangepointClassDiscoveryclueclustercolorspacecpmgenericskernlablatticeMASSmclustmovMFoompaBaseoompaDataPCDimensionpixmapRcppRcppArmadilloskmeansslamspzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Generic Methods in the Thresher package | getColors getColors,ANY-method getSplit getSplit,ANY-method getStyles getStyles,ANY-method heat heat,ANY-method makeFigures makeFigures,ANY-method scatter scatter,ANY-method |
| Match Arbitrary Class Assignments Across Methods | bestMetric countAgreement labelAccuracy labelMatcher matchLabels remap |
| Class '"Reaper"' | getColors,Reaper-method getSplit,Reaper-method getStyles,Reaper-method makeFigures,Reaper-method Reaper Reaper-class |
| Class '"SignalSet"' | SignalSet SignalSet-class |
| Class '"SimThresher"' | image,SimThresher-method makeFigures,SimThresher-method SimThresher SimThresher-class |
| Class Unions | fit or miss-class number or miss-class |
| Class '"Thresher"' | getColors,Thresher-method getSplit,Thresher-method getStyles,Thresher-method heat,Thresher-method makeFigures,Thresher-method plot,Thresher,missing-method scatter,Thresher-method screeplot,Thresher-method Thresher Thresher-class |
| Thresher and Reaper Simulated Data | savedReap savedSims sigma Thresher-data |
| Convert a Vector to Unit Length | unitize |