Package: Thresher 1.1.4

Kevin R. Coombes

Thresher: Threshing and Reaping for Principal Components

Defines the classes used to identify outliers (threshing) and compute the number of significant principal components and number of clusters (reaping) in a joint application of PCA and hierarchical clustering. See Wang et al., 2018, <doi:10.1186/s12859-017-1998-9>.

Authors:Kevin R. Coombes

Thresher_1.1.4.tar.gz
Thresher_1.1.4.tar.gz(r-4.5-noble)Thresher_1.1.4.tar.gz(r-4.4-noble)
Thresher_1.1.4.tgz(r-4.4-emscripten)Thresher_1.1.4.tgz(r-4.3-emscripten)
Thresher.pdf |Thresher.html
Thresher/json (API)
NEWS

# Install Thresher in R:
install.packages('Thresher', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://r-forge.r-project.org/projects/oompa

Datasets:
  • savedReap - Thresher and Reaper Simulated Data
  • savedSims - Thresher and Reaper Simulated Data
  • sigma - Thresher and Reaper Simulated Data

19 exports 0.71 score 24 dependencies 2 dependents

Last updated 2 months agofrom:0ad12905a84715697e8a0e522ee4aa7a088aeee7

Exports:bestMetriccountAgreementgetColorsgetSplitgetStylesheatimagelabelAccuracylabelMatchermakeFiguresmatchLabelsplotReaperremapscatterscreeplotSimThresherThresherunitize

Dependencies:ade4BiobaseBiocGenericschangepointClassDiscoveryclueclustercolorspacecpmkernlablatticeMASSmclustmovMFoompaBaseoompaDataPCDimensionpixmapRcppRcppArmadilloskmeansslamspzoo

Thresher

Rendered fromThresher.Rnwusingutils::Sweaveon May 29 2024.

Last update: 2018-04-11
Started: 2018-04-11

Readme and manuals

Help Manual

Help pageTopics
Generic Methods in the Thresher packagegetColors getColors,ANY-method getSplit getSplit,ANY-method getStyles getStyles,ANY-method heat heat,ANY-method makeFigures makeFigures,ANY-method scatter scatter,ANY-method
Match Arbitrary Class Assignments Across MethodsbestMetric countAgreement labelAccuracy labelMatcher matchLabels remap
Class '"Reaper"'getColors,Reaper-method getSplit,Reaper-method getStyles,Reaper-method makeFigures,Reaper-method Reaper Reaper-class
Class '"SignalSet"'SignalSet SignalSet-class
Class '"SimThresher"'image,SimThresher-method makeFigures,SimThresher-method SimThresher SimThresher-class
Class Unionsfit or miss-class number or miss-class
Class '"Thresher"'getColors,Thresher-method getSplit,Thresher-method getStyles,Thresher-method heat,Thresher-method makeFigures,Thresher-method plot,Thresher,missing-method scatter,Thresher-method screeplot,Thresher-method Thresher Thresher-class
Thresher and Reaper Simulated DatasavedReap savedSims sigma Thresher-data
Convert a Vector to Unit Lengthunitize