{
  "_id": "6a100745acfb0bcc41c7e544",
  "Package": "Thresher",
  "Version": "1.1.5",
  "Date": "2025-04-07",
  "Title": "Threshing and Reaping for Principal Components",
  "Authors@R": "c(person(given = c(\"Kevin\", \"R.\"), family = \"Coombes\",\nrole = c(\"aut\", \"cre\"), email = \"krc@silicovore.com\"))",
  "Description": "Defines the classes used to identify outliers (threshing)\nand compute the number of significant principal components and\nnumber of clusters (reaping) in a joint application of PCA and\nhierarchical clustering. See Wang et al., 2018,\n<doi:10.1186/s12859-017-1998-9>.",
  "License": "Apache License (== 2.0)",
  "biocViews": "Clustering",
  "URL": "http://oompa.r-forge.r-project.org/",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-22 07:32:38 UTC",
    "User": "root"
  },
  "Author": "Kevin R. Coombes [aut, cre]",
  "Maintainer": "Kevin R. Coombes <krc@silicovore.com>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2025-04-07 23:00:02 UTC",
  "RemoteUrl": "https://github.com/cran/Thresher",
  "RemoteRef": "HEAD",
  "RemoteSha": "7eae3e71d080788675d0bf66a845076e8aa0a029",
  "MD5sum": "dca13e785f47a3794146299af4dd0f77",
  "_user": "cran",
  "_type": "src",
  "_file": "Thresher_1.1.5.tar.gz",
  "_fileid": "176daf9f572d7c86d45c9b5992342112c672488656cabfab5183de9f210ddd29",
  "_filesize": 1606702,
  "_sha256": "176daf9f572d7c86d45c9b5992342112c672488656cabfab5183de9f210ddd29",
  "_created": "2026-05-22T07:32:38.000Z",
  "_published": "2026-05-22T07:35:33.090Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77336180549,
      "time": 134,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7155214723"
    },
    {
      "job": 77336180564,
      "time": 135,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7155214561"
    },
    {
      "job": 77335694440,
      "time": 203,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7155171969"
    },
    {
      "job": 77336180540,
      "time": 95,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7155202634"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26274447338",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/Thresher",
  "_commit": {
    "id": "7eae3e71d080788675d0bf66a845076e8aa0a029",
    "author": "Kevin R. Coombes <krc@silicovore.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1.5\n",
    "time": 1744066802
  },
  "_maintainer": {
    "name": "Kevin R. Coombes",
    "email": "krc@silicovore.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4",
      "role": "Depends"
    },
    {
      "package": "ClassDiscovery",
      "role": "Depends"
    },
    {
      "package": "PCDimension",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "colorspace",
      "role": "Imports"
    },
    {
      "package": "movMF",
      "role": "Imports"
    },
    {
      "package": "ade4",
      "role": "Imports"
    },
    {
      "package": "oompaBase",
      "role": "Imports"
    },
    {
      "package": "NbClust",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 5,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "clustering"
  ],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 289,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Thresher"
  },
  "_mentions": 4,
  "_devurl": "https://github.com/r-forge/oompa",
  "_searchresults": 27,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/Thresher.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.12.3",
      "date": "2018-04-11"
    },
    {
      "version": "1.0.2",
      "date": "2018-10-17"
    },
    {
      "version": "1.1.0",
      "date": "2019-03-08"
    },
    {
      "version": "1.1.1",
      "date": "2019-04-23"
    },
    {
      "version": "1.1.2",
      "date": "2019-05-06"
    },
    {
      "version": "1.1.3",
      "date": "2019-12-17"
    },
    {
      "version": "1.1.4",
      "date": "2024-04-28"
    },
    {
      "version": "1.1.5",
      "date": "2025-04-07"
    }
  ],
  "_exports": [
    "bestMetric",
    "countAgreement",
    "getColors",
    "getSplit",
    "getStyles",
    "heat",
    "image",
    "labelAccuracy",
    "labelMatcher",
    "makeFigures",
    "matchLabels",
    "plot",
    "Reaper",
    "remap",
    "scatter",
    "screeplot",
    "SimThresher",
    "Thresher",
    "unitize"
  ],
  "_datasets": [
    {
      "name": "savedReap",
      "title": "Thresher and Reaper Simulated Data",
      "object": "savedSims",
      "file": "savedSims.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "savedSims",
      "title": "Thresher and Reaper Simulated Data",
      "object": "savedSims",
      "file": "savedSims.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "sigma",
      "title": "Thresher and Reaper Simulated Data",
      "object": "savedSims",
      "file": "savedSims.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "00-generic-methods",
      "title": "Generic Methods in the Thresher package",
      "topics": [
        "getColors",
        "getColors,ANY-method",
        "getSplit",
        "getSplit,ANY-method",
        "getStyles",
        "getStyles,ANY-method",
        "heat",
        "heat,ANY-method",
        "makeFigures",
        "makeFigures,ANY-method",
        "scatter",
        "scatter,ANY-method"
      ]
    },
    {
      "page": "matchLabels",
      "title": "Match Arbitrary Class Assignments Across Methods",
      "topics": [
        "bestMetric",
        "countAgreement",
        "labelAccuracy",
        "labelMatcher",
        "matchLabels",
        "remap"
      ]
    },
    {
      "page": "Reaper-class",
      "title": "Class '\"Reaper\"'",
      "topics": [
        "getColors,Reaper-method",
        "getSplit,Reaper-method",
        "getStyles,Reaper-method",
        "makeFigures,Reaper-method",
        "Reaper",
        "Reaper-class"
      ]
    },
    {
      "page": "SignalSet-class",
      "title": "Class '\"SignalSet\"'",
      "topics": [
        "SignalSet",
        "SignalSet-class"
      ]
    },
    {
      "page": "SimThresher-class",
      "title": "Class '\"SimThresher\"'",
      "topics": [
        "image,SimThresher-method",
        "makeFigures,SimThresher-method",
        "SimThresher",
        "SimThresher-class"
      ]
    },
    {
      "page": "fit-or-miss-class",
      "title": "Class Unions",
      "topics": [
        "fit or miss-class",
        "number or miss-class"
      ]
    },
    {
      "page": "Thresher-class",
      "title": "Class '\"Thresher\"'",
      "topics": [
        "getColors,Thresher-method",
        "getSplit,Thresher-method",
        "getStyles,Thresher-method",
        "heat,Thresher-method",
        "makeFigures,Thresher-method",
        "plot,Thresher,missing-method",
        "scatter,Thresher-method",
        "screeplot,Thresher-method",
        "Thresher",
        "Thresher-class"
      ]
    },
    {
      "page": "01-dataObjects",
      "title": "Thresher and Reaper Simulated Data",
      "topics": [
        "savedReap",
        "savedSims",
        "sigma",
        "Thresher-data"
      ]
    },
    {
      "page": "unitize",
      "title": "Convert a Vector to Unit Length",
      "topics": [
        "unitize"
      ]
    }
  ],
  "_rundeps": [
    "ade4",
    "Biobase",
    "BiocGenerics",
    "changepoint",
    "ClassDiscovery",
    "clue",
    "cluster",
    "colorspace",
    "cpm",
    "generics",
    "kernlab",
    "lattice",
    "MASS",
    "mclust",
    "movMF",
    "oompaBase",
    "oompaData",
    "PCDimension",
    "pixmap",
    "Rcpp",
    "RcppArmadillo",
    "skmeans",
    "slam",
    "sp",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "Thresher.Rnw",
      "filename": "Thresher.pdf",
      "title": "Thresher",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2018-04-11 07:12:13",
      "modified": "2018-04-11 07:12:13",
      "commits": 1
    }
  ],
  "_score": 4.209515014542631,
  "_indexed": true,
  "_nocasepkg": "thresher",
  "_universes": [
    "cran",
    "r-forge"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.5",
      "date": "2026-05-22T07:34:37.000Z",
      "distro": "noble",
      "commit": "7eae3e71d080788675d0bf66a845076e8aa0a029",
      "fileid": "1f046a1298b6e77fefc7b900c9b1f1579b6de1bf18a3518f4e4b844d50362ad0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26274447338"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.5",
      "date": "2026-05-22T07:34:36.000Z",
      "distro": "noble",
      "commit": "7eae3e71d080788675d0bf66a845076e8aa0a029",
      "fileid": "16045461b8f1cc14efd390df33cae9fa52571d3c33dc2084fee01e93985d86c6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26274447338"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.5",
      "date": "2026-05-22T07:34:32.000Z",
      "commit": "7eae3e71d080788675d0bf66a845076e8aa0a029",
      "fileid": "0559152203ba2b01b0ec7abdb92a65608bb35cedcf02e88b9c939025045a1386",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26274447338"
    }
  ]
}