This package is considered a duplicate. The official version of this package is found at:https://kisungyou.r-universe.dev/TDAkit

Package: TDAkit 0.1.3

Kisung You

TDAkit: Toolkit for Topological Data Analysis

Topological data analysis studies structure and shape of the data using topological features. We provide a variety of algorithms to learn with persistent homology of the data based on functional summaries for clustering, hypothesis testing, visualization, and others. We refer to Wasserman (2018) <doi:10.1146/annurev-statistics-031017-100045> for a statistical perspective on the topic.

Authors:Kisung You [aut, cre], Byeongsu Yu [aut]

TDAkit_0.1.3.tar.gz
TDAkit_0.1.3.tar.gz(r-4.7-arm64)TDAkit_0.1.3.tar.gz(r-4.7-x86_64)TDAkit_0.1.3.tar.gz(r-4.6-arm64)TDAkit_0.1.3.tar.gz(r-4.6-x86_64)
TDAkit_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
TDAkit/json (API)
NEWS

# Install 'TDAkit' in R:

install.packages('TDAkit', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3
openmp– GCC OpenMP (GOMP) support library

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblas cpp openmp

1.48 score 1 packages 5 scripts 255 downloads 18 exports 82 dependencies

Last updated from:d94fb09992. Checks:6 OK. Indexed: no.

Target	Result	Time
linux-devel-arm64	OK	173
linux-devel-x86_64	OK	201
source / vignettes	OK	269
linux-release-arm64	OK	226
linux-release-x86_64	OK	154
wasm-release	OK	156

Exports:diag2landscape diag2silhouette diagRips fsdist fsdist2 fseqdist fshclust fskgroups fskmedoids fsmds fsmean fsnorm fssc05Z fssum fstsne gen2circles gen2holes plkernel

Dependencies:ADMM ash backports bitops boot checkmate clarabel cli cluster codetools colorspace cpp11 CVXR dbscan deSolve doParallel energy farver fastcluster fda fds FNN foreach generics ggplot2 glue gmp gsignal gsl gtable hdrcde highs isoband iterators kernlab KernSmooth ks labdsv labeling lattice lifecycle locfit lpSolve maotai MASS Matrix mclust mclustcomp mgcv multicool mvtnorm nlme osqp pcaPP pracma R6 rainbow RANN rbibutils RColorBrewer Rcpp RcppArmadillo RcppDE RcppDist RcppEigen RCurl Rdimtools Rdpack rlang RSpectra rstiefel Rtsne S7 scales scatterplot3d scs slam T4cluster TDAstats vctrs viridisLite withr

Help page	Topics
Convert Persistence Diagram into Persistence Landscape	diag2landscape
Convert Persistence Diagram into Persistent Silhouette	diag2silhouette
Compute Vietoris-Rips Complex for Persistent Homology	diagRips
Pairwise L_p Distance of Multiple Functional Summaries	fsdist
Pairwise L_p Distance for Two Sets of Functional Summaries	fsdist2
Multi-sample Energy Test of Equal Distributions	fseqdist
Hierarchical Agglomerative Clustering	fshclust
k-Groups Clustering of Multiple Functional Summaries by Energy Distance	fskgroups
K-Medoids Clustering	fskmedoids
Multidimensional Scaling	fsmds
Mean of Multiple Functional Summaries	fsmean
L_p Norm of a Single Functional Summary	fsnorm
Spectral Clustering by Zelnik-Manor and Perona (2005)	fssc05Z
Weighted Sum of Multiple Functional Summaries	fssum
t-distributed Stochastic Neighbor Embedding	fstsne
Generate Two Intersecting Circles	gen2circles
Generate Two Intertwined Holes	gen2holes
Persistence Landscape Kernel	plkernel
Plot Persistent Homology via Barcode or Diagram	plot.homology
Plot Persistence Landscape	plot.landscape

Package: TDAkit 0.1.3

TDAkit: Toolkit for Topological Data Analysis

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)