Package: TDAkit 0.1.2

Kisung You

TDAkit: Toolkit for Topological Data Analysis

Topological data analysis studies structure and shape of the data using topological features. We provide a variety of algorithms to learn with persistent homology of the data based on functional summaries for clustering, hypothesis testing, visualization, and others. We refer to Wasserman (2018) <doi:10.1146/annurev-statistics-031017-100045> for a statistical perspective on the topic.

Authors:Kisung You [aut, cre], Byeongsu Yu [aut]

TDAkit_0.1.2.tar.gz
TDAkit_0.1.2.tar.gz(r-4.5-noble)TDAkit_0.1.2.tar.gz(r-4.4-noble)
TDAkit_0.1.2.tgz(r-4.4-emscripten)TDAkit_0.1.2.tgz(r-4.3-emscripten)
TDAkit.pdf |TDAkit.html✨
TDAkit/json (API)
NEWS

# Install 'TDAkit' in R:

install.packages('TDAkit', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3
openmp– GCC OpenMP (GOMP) support library

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 4 scripts 206 downloads 18 exports 111 dependencies

Last updated 3 years agofrom:e39fbbffa8. Checks:OK: 1 NOTE: 1. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Oct 07 2024
R-4.5-linux-x86_64	NOTE	Oct 07 2024

Exports:diag2landscape diag2silhouette diagRips fsdist fsdist2 fseqdist fshclust fskgroups fskmedoids fsmds fsmean fsnorm fssc05Z fssum fstsne gen2circles gen2holes plkernel

Dependencies:ADMM ash base64enc bit bit64 bitops boot bslib cachem clarabel cli cluster codetools colorspace CVXR dbscan deSolve digest doParallel ECOSolveR energy evaluate fansi farver fastcluster fastmap fda fds FNN fontawesome foreach fs generics ggplot2 glue gmp gsl gtable hdrcde highr htmltools htmlwidgets isoband iterators jquerylib jsonlite kernlab KernSmooth knitr ks labdsv labeling lattice lifecycle locfit lpSolve magrittr maotai MASS Matrix mclust mclustcomp memoise mgcv mime minpack.lm multicool munsell mvtnorm nlme osqp pcaPP pillar pkgconfig pracma R6 rainbow RANN rappdirs rbibutils RColorBrewer Rcpp RcppArmadillo RcppDE RcppDist RcppEigen RCurl Rdimtools Rdpack rgl rlang rmarkdown Rmpfr RSpectra rstiefel Rtsne sass scales scatterplot3d scs shapes T4cluster TDAstats tibble tinytex utf8 vctrs viridisLite withr xfun yaml

Help page	Topics
Convert Persistence Diagram into Persistence Landscape	diag2landscape
Convert Persistence Diagram into Persistent Silhouette	diag2silhouette
Compute Vietoris-Rips Complex for Persistent Homology	diagRips
Pairwise L_p Distance of Multiple Functional Summaries	fsdist
Pairwise L_p Distance for Two Sets of Functional Summaries	fsdist2
Multi-sample Energy Test of Equal Distributions	fseqdist
Hierarchical Agglomerative Clustering	fshclust
k-Groups Clustering of Multiple Functional Summaries by Energy Distance	fskgroups
K-Medoids Clustering	fskmedoids
Multidimensional Scaling	fsmds
Mean of Multiple Functional Summaries	fsmean
L_p Norm of a Single Functional Summary	fsnorm
Spectral Clustering by Zelnik-Manor and Perona (2005)	fssc05Z
Weighted Sum of Multiple Functional Summaries	fssum
t-distributed Stochastic Neighbor Embedding	fstsne
Generate Two Intersecting Circles	gen2circles
Generate Two Intertwined Holes	gen2holes
Persistence Landscape Kernel	plkernel
Plot Persistent Homology via Barcode or Diagram	plot.homology
Plot Persistence Landscape	plot.landscape

Package: TDAkit 0.1.2

TDAkit: Toolkit for Topological Data Analysis

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)