{ "_id": "6ac358fbd743750d376daa70", "Package": "TDAkit", "Type": "Package", "Title": "Toolkit for Topological Data Analysis", "Version": "0.1.3", "Authors@R": "c(person(\"Kisung\", \"You\", role = c(\"aut\", \"cre\"),email = \"kisung.you@outlook.com\",comment=c(ORCID=\"0000-0002-8584-459X\")),person(\"Byeongsu\",\"Yu\", role=\"aut\",email=\"byeongsu.yu@math.tamu.edu\"))", "Description": "Topological data analysis studies structure and shape of\nthe data using topological features. We provide a variety of\nalgorithms to learn with persistent homology of the data based\non functional summaries for clustering, hypothesis testing,\nvisualization, and others. We refer to Wasserman (2018)\n for a\nstatistical perspective on the topic.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "RdMacros": "Rdpack", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-05 07:54:15 UTC", "User": "root" }, "Author": "Kisung You [aut, cre] (ORCID:\n), Byeongsu Yu [aut]", "Maintainer": "Kisung You ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-09-21 22:10:13 UTC", "RemoteUrl": "https://github.com/cran/TDAkit", "RemoteRef": "HEAD", "RemoteSha": "d94fb09992b9cd5f6056b05139d54b88a225325a", "_user": "cran", "_type": "src", "_file": "TDAkit_0.1.3.tar.gz", "_fileid": "https://r2.ropensci.org/7bf4affc67d23760c56da3c8103c77b64f2637f9fbc28ca29f38ca7abb8694b8", "_filesize": 245679, "_sha256": "7bf4affc67d23760c56da3c8103c77b64f2637f9fbc28ca29f38ca7abb8694b8", "_expires": "2027-01-13T07:59:53.000Z", "_created": "2026-10-05T07:54:15.000Z", "_published": "2026-10-05T07:59:55.380Z", "_jobs": [ { "job": 111666997821, "time": 160, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11332426225" }, { "job": 111666997863, "time": 175, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11332226649" }, { "job": 111666997783, "time": 175, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11332276637" }, { "job": 111666997848, "time": 175, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11331848488" }, { "job": 111665897393, "time": 210, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11331783538" }, { "job": 111666997684, "time": 162, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11332136931" }, { "job": 111666997799, "time": 280, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11332216179" }, { "job": 111666997745, "time": 202, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11331679857" }, { "job": 111666997866, "time": 240, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11331719642" }, { "job": 111666997780, "time": 150, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11331764134" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/cran/actions/runs/37280053078", "_status": "success", "_upstream": "https://github.com/cran/TDAkit", "_commit": { "id": "d94fb09992b9cd5f6056b05139d54b88a225325a", "author": "Kisung You ", "committer": "cran-robot ", "message": "version 0.1.3\n", "time": 1758492613 }, "_maintainer": { "name": "Kisung You", "email": "kisung.you@outlook.com", "login": "kisungyou", "twitter": "@kisung_you", "description": "", "uuid": 22312643, "orcid": "0000-0002-8584-459X" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "Rcpp", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "TDAstats", "role": "Imports" }, { "package": "T4cluster", "role": "Imports" }, { "package": "energy", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "maotai", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "kisungyou", "count": 1, "uuid": 22312643 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 631, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 319, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TDAkit" }, "_searchresults": 5, "_topics": [ "openblas", "cpp", "openmp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/TDAkit.html", "LICENSE" ], "_homeurl": "https://github.com/kisungyou/tdakit", "_realowner": "kisungyou", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2021-03-11" }, { "version": "0.1.2", "date": "2021-08-23" }, { "version": "0.1.3", "date": "2025-09-21" } ], "_exports": [ "diag2landscape", "diag2silhouette", "diagRips", "fsdist", "fsdist2", "fseqdist", "fshclust", "fskgroups", "fskmedoids", "fsmds", "fsmean", "fsnorm", "fssc05Z", "fssum", "fstsne", "gen2circles", "gen2holes", "plkernel" ], "_help": [ { "page": "diag2landscape", "title": "Convert Persistence Diagram into Persistence Landscape", "concept": [ "convert" ], "topics": [ "diag2landscape" ] }, { "page": "diag2silhouette", "title": "Convert Persistence Diagram into Persistent Silhouette", "concept": [ "convert" ], "topics": [ "diag2silhouette" ] }, { "page": "diagRips", "title": "Compute Vietoris-Rips Complex for Persistent Homology", "concept": [ "diagram" ], "topics": [ "diagRips" ] }, { "page": "fsdist", "title": "Pairwise L_p Distance of Multiple Functional Summaries", "concept": [ "summaries" ], "topics": [ "fsdist" ] }, { "page": "fsdist2", "title": "Pairwise L_p Distance for Two Sets of Functional Summaries", "concept": [ "summaries" ], "topics": [ "fsdist2" ] }, { "page": "fseqdist", "title": "Multi-sample Energy Test of Equal Distributions", "concept": [ "summaries" ], "topics": [ "fseqdist" ] }, { "page": "fshclust", "title": "Hierarchical Agglomerative Clustering", "concept": [ "summaries" ], "topics": [ "fshclust" ] }, { "page": "fskgroups", "title": "k-Groups Clustering of Multiple Functional Summaries by Energy Distance", "concept": [ "summaries" ], "topics": [ "fskgroups" ] }, { "page": "fskmedoids", "title": "K-Medoids Clustering", "concept": [ "summaries" ], "topics": [ "fskmedoids" ] }, { "page": "fsmds", "title": "Multidimensional Scaling", "concept": [ "summaries" ], "topics": [ "fsmds" ] }, { "page": "fsmean", "title": "Mean of Multiple Functional Summaries", "concept": [ "summaries" ], "topics": [ "fsmean" ] }, { "page": "fsnorm", "title": "L_p Norm of a Single Functional Summary", "concept": [ "summaries" ], "topics": [ "fsnorm" ] }, { "page": "fssc05Z", "title": "Spectral Clustering by Zelnik-Manor and Perona (2005)", "concept": [ "summaries" ], "topics": [ "fssc05Z" ] }, { "page": "fssum", "title": "Weighted Sum of Multiple Functional Summaries", "concept": [ "summaries" ], "topics": [ "fssum" ] }, { "page": "fstsne", "title": "t-distributed Stochastic Neighbor Embedding", "concept": [ "summaries" ], "topics": [ "fstsne" ] }, { "page": "gen2circles", "title": "Generate Two Intersecting Circles", "concept": [ "data" ], "topics": [ "gen2circles" ] }, { "page": "gen2holes", "title": "Generate Two Intertwined Holes", "concept": [ "data" ], "topics": [ "gen2holes" ] }, { "page": "plkernel", "title": "Persistence Landscape Kernel", "concept": [ "landscape" ], "topics": [ "plkernel" ] }, { "page": "plot.homology", "title": "Plot Persistent Homology via Barcode or Diagram", "concept": [ "utility" ], "topics": [ "plot.homology" ] }, { "page": "plot.landscape", "title": "Plot Persistence Landscape", "concept": [ "utility" ], "topics": [ "plot.landscape" ] } ], "_rundeps": [ "ADMM", "ash", "backports", "bitops", "boot", "checkmate", "clarabel", "cli", "cluster", "codetools", "colorspace", "cpp11", "CVXR", "dbscan", "deSolve", "doParallel", "energy", "farver", "fastcluster", "fda", "fds", "FNN", "foreach", "generics", "ggplot2", "glue", "gmp", "gsignal", "gsl", "gtable", "hdrcde", "highs", "isoband", "iterators", "kernlab", "KernSmooth", "ks", "labdsv", "labeling", "lattice", "lifecycle", "locfit", "lpSolve", "maotai", "MASS", "Matrix", "mclust", "mclustcomp", "mgcv", "multicool", "mvtnorm", "nlme", "osqp", "pcaPP", "pracma", "R6", "rainbow", "RANN", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppDE", "RcppDist", "RcppEigen", "RCurl", "Rdimtools", "Rdpack", "rlang", "RSpectra", "rstiefel", "Rtsne", "S7", "scales", "scatterplot3d", "scs", "slam", "T4cluster", "TDAstats", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_score": 1.4771212547196624, "_indexed": false, "_nocasepkg": "tdakit", "_universes": [ "cran" ], "_indexurl": "https://kisungyou.r-universe.dev/TDAkit", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.3", "date": "2026-10-05T07:56:45.000Z", "distro": "resolute", "arch": "aarch64", "commit": "d94fb09992b9cd5f6056b05139d54b88a225325a", "fileid": "https://r2.ropensci.org/0a7586d61d2754c790ad18643596bac321eae9021528b83218f025b454d936c1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37280053078" }, { "r": "4.7.0", "os": "linux", "version": "0.1.3", "date": "2026-10-05T07:56:48.000Z", "distro": "resolute", "arch": "x86_64", "commit": "d94fb09992b9cd5f6056b05139d54b88a225325a", "fileid": "https://r2.ropensci.org/609557613139d8127214695085e75c9513aafbfde32ff69bd781a7047a2feef1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37280053078" }, { "r": "4.6.1", "os": "linux", "version": "0.1.3", "date": "2026-10-05T07:57:00.000Z", "distro": "resolute", "arch": "aarch64", "commit": "d94fb09992b9cd5f6056b05139d54b88a225325a", "fileid": "https://r2.ropensci.org/6b69cc816f822b5afe1484b04eec6568b578c8e32e6ca1a3a5a4c2d1de57a77a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37280053078" }, { "r": "4.6.1", "os": "linux", "version": "0.1.3", "date": "2026-10-05T07:56:51.000Z", "distro": "resolute", "arch": "x86_64", "commit": "d94fb09992b9cd5f6056b05139d54b88a225325a", "fileid": "https://r2.ropensci.org/092ebeeef7600f7db49416477d2a4be1b4a94f3aab7adff3859500c18ad34109", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37280053078" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.3", "date": "2026-10-05T07:57:23.000Z", "arch": "emscripten", "commit": "d94fb09992b9cd5f6056b05139d54b88a225325a", "fileid": "https://r2.ropensci.org/c967647e66423fe7b1b959ffa6dede680b8627850ea7516a3a2b3e0595afa4eb", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/37280053078" }, { "r": "4.7.0", "os": "win", "version": "0.1.3", "date": "2026-10-05T07:58:15.000Z", "arch": "aarch64", "commit": "d94fb09992b9cd5f6056b05139d54b88a225325a", "fileid": "https://r2.ropensci.org/f97fcfd6ad5a2f69428aa718016f14ace4bedb0d79387c15e0194ed39d97b210", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37280053078" }, { "r": "4.7.0", "os": "win", "version": "0.1.3", "date": "2026-10-05T07:55:56.000Z", "arch": "x86_64", "commit": "d94fb09992b9cd5f6056b05139d54b88a225325a", "fileid": "https://r2.ropensci.org/0b6a8dbf95581a972b34ce64c8c541edb30cd09bc832d87edb06fb9fb5be7546", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37280053078" }, { "r": "4.6.1", "os": "win", "version": "0.1.3", "date": "2026-10-05T07:57:36.000Z", "arch": "aarch64", "commit": "d94fb09992b9cd5f6056b05139d54b88a225325a", "fileid": "https://r2.ropensci.org/9ee6d7e0849731b5fa50939f7497cde1b0fba2163a55c113ca66f9a60990cca3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37280053078" }, { "r": "4.6.1", "os": "win", "version": "0.1.3", "date": "2026-10-05T07:55:43.000Z", "arch": "x86_64", "commit": "d94fb09992b9cd5f6056b05139d54b88a225325a", "fileid": "https://r2.ropensci.org/0490a8583a9812ef9a8fea111e4b03f81b4a0fe1b12deded8a4fce7857c5dc35", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37280053078" } ] }