Package: SubgrpID 0.12
Xin Huang
SubgrpID: Patient Subgroup Identification for Clinical Drug Development
Implementation of Sequential BATTing (bootstrapping and aggregating of thresholds from trees) for developing threshold-based multivariate (prognostic/predictive) biomarker signatures. Variable selection is automatically built-in. Final signatures are returned with interaction plots for predictive signatures. Cross-validation performance evaluation and testing dataset results are also output. Detail algorithms are described in Huang et al (2017) <doi:10.1002/sim.7236>.
Authors:
SubgrpID_0.12.tar.gz
SubgrpID_0.12.tar.gz(r-4.5-noble)SubgrpID_0.12.tar.gz(r-4.4-noble)
SubgrpID_0.12.tgz(r-4.4-emscripten)SubgrpID_0.12.tgz(r-4.3-emscripten)
SubgrpID.pdf |SubgrpID.html✨
SubgrpID/json (API)
| # Install 'SubgrpID' in R: |
| install.packages('SubgrpID', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 11 months agofrom:c7e91038c0. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-linux | OK | Oct 31 2024 |
Exports:data.genfilterSubgrpID
Dependencies:clicodetoolscolorspacefansifarverforeachggplot2glmnetgluegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppEigenrlangrpartscalesshapesurvivaltibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| balanced.folds | balanced.folds |
| batting.pred | batting.pred |
| batting.prog | batting.prog |
| binary.stats | binary.stats |
| cv.folds | cv.folds |
| cv.pval | cv.pval |
| cv.seqlr.batting | cv.seqlr.batting |
| data.gen | data.gen |
| evaluate.cv.results | evaluate.cv.results |
| evaluate.results | evaluate.results |
| filter | filter |
| filter.glmnet | filter.glmnet |
| filter.unicart | filter.unicart |
| filter.univariate | filter.univariate |
| find.pred.stats | find.pred.stats |
| find.prog.stats | find.prog.stats |
| get.var.counts.seq | get.var.counts.seq |
| interaction.plot | interaction.plot |
| kfold.cv | kfold.cv |
| make.arg.list | make.arg.list |
| permute.rows | permute.rows |
| permute.vector | permute.vector |
| pred.seqlr | pred.seqlr |
| pred.seqlr.cv | pred.seqlr.cv |
| query.data | query.data |
| resample | resample |
| seqlr.batting | seqlr.batting |
| seqlr.batting.wrapper | seqlr.batting.wrapper |
| seqlr.find.cutoff.pred | seqlr.find.cutoff.pred |
| seqlr.find.cutoff.prog | seqlr.find.cutoff.prog |
| seqlr.score.pred | seqlr.score.pred |
| seqlr.score.prog | seqlr.score.prog |
| SubgrpID | SubgrpID |
| summarize.cv.stats | summarize.cv.stats |