{
  "_id": "6a4ded27e691af43f13de3f8",
  "Package": "SubgrpID",
  "Type": "Package",
  "Title": "Patient Subgroup Identification for Clinical Drug Development",
  "Version": "0.14",
  "Date": "2026-03-08",
  "URL": "https://xhuang4.github.io/seqbatting-html/",
  "Authors@R": "c(person(\"Xin\", \"Huang\", role = c(\"aut\", \"cre\",\"cph\"), email = \"xin.huang@abbvie.com\"),\nperson(\"Yan\", \"Sun\", role = c(\"aut\")),\nperson(\"Saptarshi\", \"Chatterjee\", role = c(\"aut\")),\nperson(\"Paul\", \"Trow\", role = c(\"aut\"))\n)",
  "Description": "Implementation of Sequential BATTing (bootstrapping and\naggregating of thresholds from trees) for developing\nthreshold-based multivariate (prognostic/predictive) biomarker\nsignatures. Variable selection is automatically built-in. Final\nsignatures are returned with interaction plots for predictive\nsignatures. Cross-validation performance evaluation and testing\ndataset results are also output. Detail algorithms are\ndescribed in Huang et al (2017) <doi:10.1002/sim.7236>.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "NeedsCompilation": "no",
  "Author": "Xin Huang [aut, cre, cph], Yan Sun [aut], Saptarshi Chatterjee\n[aut], Paul Trow [aut]",
  "Maintainer": "Xin Huang <xin.huang@abbvie.com>",
  "Packaged": {
    "Date": "2026-07-08 06:21:30 UTC",
    "User": "root"
  },
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-03-10 10:20:02 UTC",
  "RemoteUrl": "https://github.com/cran/SubgrpID",
  "RemoteRef": "HEAD",
  "RemoteSha": "c5389ef0d4e19f15ce5c224ba8aeef212c300890",
  "_user": "cran",
  "_type": "src",
  "_file": "SubgrpID_0.14.tar.gz",
  "_fileid": "https://r2.ropensci.org/c37384823e63360c0b3c3b39d69c91913fa6b44745e878772da06e837986103a",
  "_filesize": 177523,
  "_sha256": "c37384823e63360c0b3c3b39d69c91913fa6b44745e878772da06e837986103a",
  "_expires": "2026-10-16T06:24:37.000Z",
  "_created": "2026-07-08T06:21:30.000Z",
  "_published": "2026-07-08T06:24:38.923Z",
  "_jobs": [
    {
      "job": 85801434794,
      "time": 145,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8159904778"
    },
    {
      "job": 85801434789,
      "time": 142,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8159904157"
    },
    {
      "job": 85801010697,
      "time": 186,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8159860898"
    },
    {
      "job": 85801434813,
      "time": 112,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8159894937"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/28921968731",
  "_status": "success",
  "_upstream": "https://github.com/cran/SubgrpID",
  "_commit": {
    "id": "c5389ef0d4e19f15ce5c224ba8aeef212c300890",
    "author": "Xin Huang <xin.huang@abbvie.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.14\n",
    "time": 1773138002
  },
  "_maintainer": {
    "name": "Xin Huang",
    "email": "xin.huang@abbvie.com"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "glmnet",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "rpart",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-10",
      "n": 1
    },
    {
      "week": "2026-11",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.13",
      "date": "2026-03-07"
    },
    {
      "name": "0.14",
      "date": "2026-03-10"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "xhuang4",
      "count": 2,
      "uuid": 9288653
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 617,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 501,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SubgrpID"
  },
  "_devurl": "https://github.com/xhuang4/seqbatting-html",
  "_searchresults": 3,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/SubgrpID.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.10",
      "date": "2017-02-28"
    },
    {
      "version": "0.11",
      "date": "2017-03-04"
    },
    {
      "version": "0.12",
      "date": "2024-02-03"
    },
    {
      "version": "0.13",
      "date": "2026-03-07"
    },
    {
      "version": "0.14",
      "date": "2026-03-10"
    }
  ],
  "_exports": [
    "data.gen",
    "prefilter_variables",
    "SubgrpID"
  ],
  "_help": [
    {
      "page": "dot-prefilter_glmnet",
      "title": ".prefilter_glmnet",
      "topics": [
        ".prefilter_glmnet"
      ]
    },
    {
      "page": "dot-prefilter_unicart",
      "title": ".prefilter_unicart",
      "topics": [
        ".prefilter_unicart"
      ]
    },
    {
      "page": "dot-prefilter_univariate",
      "title": ".prefilter_univariate",
      "topics": [
        ".prefilter_univariate"
      ]
    },
    {
      "page": "balanced.folds",
      "title": "balanced.folds",
      "topics": [
        "balanced.folds"
      ]
    },
    {
      "page": "batting.pred",
      "title": "batting.pred",
      "topics": [
        "batting.pred"
      ]
    },
    {
      "page": "batting.prog",
      "title": "batting.prog",
      "topics": [
        "batting.prog"
      ]
    },
    {
      "page": "binary.stats",
      "title": "binary.stats",
      "topics": [
        "binary.stats"
      ]
    },
    {
      "page": "cv.folds",
      "title": "cv.folds",
      "topics": [
        "cv.folds"
      ]
    },
    {
      "page": "cv.pval",
      "title": "cv.pval",
      "topics": [
        "cv.pval"
      ]
    },
    {
      "page": "cv.seqlr.batting",
      "title": "cv.seqlr.batting",
      "topics": [
        "cv.seqlr.batting"
      ]
    },
    {
      "page": "data.gen",
      "title": "data.gen",
      "topics": [
        "data.gen"
      ]
    },
    {
      "page": "evaluate.cv.results",
      "title": "evaluate.cv.results",
      "topics": [
        "evaluate.cv.results"
      ]
    },
    {
      "page": "evaluate.results",
      "title": "evaluate.results",
      "topics": [
        "evaluate.results"
      ]
    },
    {
      "page": "find.pred.stats",
      "title": "find.pred.stats",
      "topics": [
        "find.pred.stats"
      ]
    },
    {
      "page": "find.prog.stats",
      "title": "find.prog.stats",
      "topics": [
        "find.prog.stats"
      ]
    },
    {
      "page": "get.var.counts.seq",
      "title": "get.var.counts.seq",
      "topics": [
        "get.var.counts.seq"
      ]
    },
    {
      "page": "interaction.plot",
      "title": "interaction.plot",
      "topics": [
        "interaction.plot"
      ]
    },
    {
      "page": "kfold.cv",
      "title": "kfold.cv",
      "topics": [
        "kfold.cv"
      ]
    },
    {
      "page": "make.arg.list",
      "title": "make.arg.list",
      "topics": [
        "make.arg.list"
      ]
    },
    {
      "page": "permute.rows",
      "title": "permute.rows",
      "topics": [
        "permute.rows"
      ]
    },
    {
      "page": "permute.vector",
      "title": "permute.vector",
      "topics": [
        "permute.vector"
      ]
    },
    {
      "page": "pred.seqlr",
      "title": "pred.seqlr",
      "topics": [
        "pred.seqlr"
      ]
    },
    {
      "page": "pred.seqlr.cv",
      "title": "pred.seqlr.cv",
      "topics": [
        "pred.seqlr.cv"
      ]
    },
    {
      "page": "prefilter_variables",
      "title": "prefilter_variables",
      "topics": [
        "prefilter_variables"
      ]
    },
    {
      "page": "query.data",
      "title": "query.data",
      "topics": [
        "query.data"
      ]
    },
    {
      "page": "resample",
      "title": "resample",
      "topics": [
        "resample"
      ]
    },
    {
      "page": "seqlr.batting",
      "title": "seqlr.batting",
      "topics": [
        "seqlr.batting"
      ]
    },
    {
      "page": "seqlr.batting.wrapper",
      "title": "seqlr.batting.wrapper",
      "topics": [
        "seqlr.batting.wrapper"
      ]
    },
    {
      "page": "seqlr.find.cutoff.pred",
      "title": "seqlr.find.cutoff.pred",
      "topics": [
        "seqlr.find.cutoff.pred"
      ]
    },
    {
      "page": "seqlr.find.cutoff.prog",
      "title": "seqlr.find.cutoff.prog",
      "topics": [
        "seqlr.find.cutoff.prog"
      ]
    },
    {
      "page": "seqlr.score.pred",
      "title": "seqlr.score.pred",
      "topics": [
        "seqlr.score.pred"
      ]
    },
    {
      "page": "seqlr.score.prog",
      "title": "seqlr.score.prog",
      "topics": [
        "seqlr.score.prog"
      ]
    },
    {
      "page": "SubgrpID",
      "title": "SubgrpID",
      "topics": [
        "SubgrpID"
      ]
    },
    {
      "page": "summarize.cv.stats",
      "title": "summarize.cv.stats",
      "topics": [
        "summarize.cv.stats"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "codetools",
    "cpp11",
    "farver",
    "foreach",
    "ggplot2",
    "glmnet",
    "glue",
    "gtable",
    "isoband",
    "iterators",
    "labeling",
    "lattice",
    "lifecycle",
    "MASS",
    "Matrix",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "rlang",
    "rpart",
    "S7",
    "scales",
    "shape",
    "survival",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 1.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "subgrpid",
  "_universes": [
    "cran",
    "xhuang4"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.14",
      "date": "2026-07-08T06:23:39.000Z",
      "distro": "resolute",
      "commit": "c5389ef0d4e19f15ce5c224ba8aeef212c300890",
      "fileid": "https://r2.ropensci.org/6d8dcf2f3e0e19259c3d25fa45b0dfb8562aac26da24683086ea4e9e7b0c9c4d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/28921968731"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.14",
      "date": "2026-07-08T06:23:37.000Z",
      "distro": "resolute",
      "commit": "c5389ef0d4e19f15ce5c224ba8aeef212c300890",
      "fileid": "https://r2.ropensci.org/cd3061c7bbced306b84927f6ba666e58a3001e830fa57d6c8e9b815923105023",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/28921968731"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.14",
      "date": "2026-07-08T06:23:44.000Z",
      "commit": "c5389ef0d4e19f15ce5c224ba8aeef212c300890",
      "fileid": "https://r2.ropensci.org/2aedfe9c1fc4bfc2c8dc085aa0c6778f3b2ef6fc20589330e4ff286d9f99257b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/28921968731"
    }
  ]
}