Package: SpNMF 0.1.1
Yun Cai
SpNMF: Supervised NMF
Non-negative Matrix Factorization(NMF) is a powerful tool for identifying the key features of microbial communities and a dimension-reduction method. When we are interested in the differences between the structures of two groups of communities, supervised NMF(Yun Cai, Hong Gu and Tobby Kenney (2017),<doi:10.1186/s40168-017-0323-1>) provides a better way to do this, while retaining all the advantages of NMF -- such as interpretability, and being based on a simple biological intuition.
Authors:
SpNMF_0.1.1.tar.gz
SpNMF_0.1.1.tar.gz(r-4.5-noble)SpNMF_0.1.1.tar.gz(r-4.4-noble)
SpNMF_0.1.1.tgz(r-4.4-emscripten)SpNMF_0.1.1.tgz(r-4.3-emscripten)
SpNMF.pdf |SpNMF.html✨
SpNMF/json (API)
| # Install 'SpNMF' in R: |
| install.packages('SpNMF', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- spdata - Spdata
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:f181f1cd83. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 10 2024 |
| R-4.5-linux | OK | Dec 10 2024 |
Dependencies:BiobaseBiocGenericsBiocManagercliclustercodetoolscolorspacedigestdoParallelfansifarverforeachgenericsggplot2gluegridBasegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmeNMFpillarpkgconfigplyrR6RColorBrewerRcppregistryreshape2rlangrngtoolsscalesstringistringrtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| chty | chty |
| getT | getT |
| spdata | spdata |
| spnmf | spnmf |