Package: STAREG 1.0.3

Yan Li

STAREG: An Empirical Bayes Approach for Replicability Analysis Across Two Studies

A robust and powerful empirical Bayesian approach is developed for replicability analysis of two large-scale experimental studies. The method controls the false discovery rate by using the joint local false discovery rate based on the replicability null as the test statistic. An EM algorithm combined with a shape constraint nonparametric method is used to estimate unknown parameters and functions. [Li, Y. et al., (2023), <https://www.biorxiv.org/content/10.1101/2023.05.30.542607v1>].

Authors:Yan Li [aut, cre, cph], Xiang Zhou [aut], Rui Chen [aut], Xianyang Zhang [aut], Hongyuan Cao [aut, ctb]

STAREG_1.0.3.tar.gz
STAREG_1.0.3.tar.gz(r-4.5-noble)STAREG_1.0.3.tar.gz(r-4.4-noble)
STAREG_1.0.3.tgz(r-4.4-emscripten)STAREG_1.0.3.tgz(r-4.3-emscripten)
STAREG.pdf |STAREG.html✨
STAREG/json (API)

# Install 'STAREG' in R:
install.packages('STAREG', repos = 'https://cloud.r-project.org')
Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblascppopenmp

1.00 score 220 downloads 2 exports 35 dependencies

Last updated 2 years agofrom:6db1fad948. Checks:3 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 09 2025
R-4.5-linux-x86_64OKMar 09 2025
R-4.4-linux-x86_64OKMar 09 2025

Exports:em_lfdrstareg

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrqvalueR6RColorBrewerRcppRcppArmadilloreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithr

Citation

To cite package ‘STAREG’ in publications use:

Yan Li, Xiang Zhou, Rui Chen, Xianyang Zhang, Hongyuan Cao (2023). STAREG: An Empirical Bayes Approach for Replicability Analysis Across Two Studies. R package version 1.0.3, https://CRAN.R-project.org/package=STAREG.

Corresponding BibTeX entry: 

  @Manual{,
    title = {STAREG: An Empirical Bayes Approach for Replicability
      Analysis Across Two Studies},
    author = {{Yan Li} and {Xiang Zhou} and {Rui Chen} and {Xianyang
      Zhang} and {Hongyuan Cao}},
    year = {2023},
    note = {R package version 1.0.3},
    url = {https://CRAN.R-project.org/package=STAREG},
  }