Package: SNFtool 2.3.1

Benjamin Brew

SNFtool: Similarity Network Fusion

Similarity Network Fusion takes multiple views of a network and fuses them together to construct an overall status matrix. The input to our algorithm can be feature vectors, pairwise distances, or pairwise similarities. The learned status matrix can then be used for retrieval, clustering, and classification.

Authors:Bo Wang, Aziz Mezlini, Feyyaz Demir, Marc Fiume, Zhuowen Tu, Michael Brudno, Benjamin Haibe-Kains, Anna Goldenberg

SNFtool_2.3.1.tar.gz
SNFtool_2.3.1.tar.gz(r-4.5-noble)SNFtool_2.3.1.tar.gz(r-4.4-noble)
SNFtool_2.3.1.tgz(r-4.4-emscripten)SNFtool_2.3.1.tgz(r-4.3-emscripten)
SNFtool.pdf |SNFtool.html✨
SNFtool/json (API)

# Install 'SNFtool' in R:
install.packages('SNFtool', repos = 'https://cloud.r-project.org')
Datasets:

On CRAN:

Conda:r-snftool-2.3.1(2025-03-25)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

4.31 score 19 stars 4 packages 677 downloads 9 mentions 16 exports 3 dependencies

Last updated 4 years agofrom:64ade299d2. Checks:3 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 10 2025
R-4.5-linuxOKMar 10 2025
R-4.4-linuxOKMar 10 2025

Exports:affinityMatrixcalNMIchiDist2concordanceNetworkNMIdisplayClustersdisplayClustersWithHeatmapdist2estimateNumberOfClustersGivenGraphgetColorsForGroupsgroupPredictheatmapPlusplotAlluvialrankFeaturesByNMISNFspectralClusteringstandardNormalization

Dependencies:alluvialExPositionprettyGraphs

Citation

To cite package ‘SNFtool’ in publications use:

Wang B, Mezlini A, Demir F, Fiume M, Tu Z, Brudno M, Haibe-Kains B, Goldenberg A (2021). SNFtool: Similarity Network Fusion. R package version 2.3.1, https://CRAN.R-project.org/package=SNFtool.

ATTENTION: This citation information has been auto-generated from the package DESCRIPTION file and may need manual editing, see ‘help("citation")’.

Corresponding BibTeX entry: 

  @Manual{,
    title = {SNFtool: Similarity Network Fusion},
    author = {Bo Wang and Aziz Mezlini and Feyyaz Demir and Marc Fiume
      and Zhuowen Tu and Michael Brudno and Benjamin Haibe-Kains and
      Anna Goldenberg},
    year = {2021},
    note = {R package version 2.3.1},
    url = {https://CRAN.R-project.org/package=SNFtool},
  }