{ "_id": "6a61c4fff673e46fff56f2ca", "Package": "SNFtool", "Type": "Package", "Title": "Similarity Network Fusion", "Version": "2.3.1", "Date": "2021-06-10", "Author": "Bo Wang, Aziz Mezlini, Feyyaz Demir, Marc Fiume, Zhuowen Tu,\nMichael Brudno, Benjamin Haibe-Kains, Anna Goldenberg", "Maintainer": "Benjamin Brew ", "Description": "Similarity Network Fusion takes multiple views of a\nnetwork and fuses them together to construct an overall status\nmatrix. The input to our algorithm can be feature vectors,\npairwise distances, or pairwise similarities. The learned\nstatus matrix can then be used for retrieval, clustering, and\nclassification.", "License": "GPL", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-23 07:36:04 UTC", "User": "root" }, "Repository": "https://cran.r-universe.dev", "Date/Publication": "2021-06-11 07:40:15 UTC", "RemoteUrl": "https://github.com/cran/SNFtool", "RemoteRef": "HEAD", "RemoteSha": "64ade299d2cd10e6605063637fed1103564d0ea4", "_user": "cran", "_type": "src", "_file": "SNFtool_2.3.1.tar.gz", "_fileid": "https://r2.ropensci.org/071449c0cf1956f5704e1d094db2fc08e5bcc8525ae716886ae678831e291b3e", "_filesize": 384431, "_sha256": "071449c0cf1956f5704e1d094db2fc08e5bcc8525ae716886ae678831e291b3e", "_expires": "2026-10-31T07:38:36.000Z", "_created": "2026-07-23T07:36:04.000Z", "_published": "2026-07-23T07:38:38.894Z", "_jobs": [ { "job": 89146380279, "time": 110, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8556150667" }, { "job": 89146380272, "time": 115, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8556151989" }, { "job": 89145958726, "time": 159, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8556111423" }, { "job": 89146380270, "time": 97, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8556145468" }, { "job": 89146380297, "time": 93, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8556144473" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/cran/actions/runs/29988573878", "_status": "success", "_upstream": "https://github.com/cran/SNFtool", "_commit": { "id": "64ade299d2cd10e6605063637fed1103564d0ea4", "author": "Benjamin Brew ", "committer": "cran-robot ", "message": "version 2.3.1\n", "time": 1623397215 }, "_maintainer": { "name": "Benjamin Brew", "email": "goldenberglab@gmail.com" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "ExPosition", "role": "Imports" }, { "package": "alluvial", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 3, "_updates": [], "_tags": [], "_stars": 23, "_contributors": [ { "user": "bowang87", "count": 3, "uuid": 5374555 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 623, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 775, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SNFtool" }, "_mentions": 9, "_searchresults": 716, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/SNFtool.html", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "2.0.3", "date": "2014-03-03" }, { "version": "2.1", "date": "2014-03-29" }, { "version": "2.2", "date": "2014-09-08" }, { "version": "2.2.1", "date": "2017-11-25" }, { "version": "2.3.0", "date": "2018-04-24" }, { "version": "2.3.1", "date": "2021-06-11" } ], "_exports": [ "affinityMatrix", "calNMI", "chiDist2", "concordanceNetworkNMI", "displayClusters", "displayClustersWithHeatmap", "dist2", "estimateNumberOfClustersGivenGraph", "getColorsForGroups", "groupPredict", "heatmapPlus", "plotAlluvial", "rankFeaturesByNMI", "SNF", "spectralClustering", "standardNormalization" ], "_datasets": [ { "name": "Data1", "title": "Data1", "object": "Data1", "file": "Data1.rda", "class": [ "data.frame" ], "fields": [ "V1", "V2" ], "rows": 200, "table": true, "tojson": true }, { "name": "Data2", "title": "Data2", "object": "Data2", "file": "Data2.rda", "class": [ "data.frame" ], "fields": [ "V3", "V4" ], "rows": 200, "table": true, "tojson": true }, { "name": "dataL", "title": "dataL", "object": "dataL", "file": "dataL.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "label", "title": "Labels for dataL dataset", "object": "label", "file": "label.rda", "class": [ "integer" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "affinityMatrix", "title": "Affinity matrix calculation", "topics": [ "affinityMatrix" ] }, { "page": "calNMI", "title": "Mutual Information calculation", "topics": [ "calNMI" ] }, { "page": "chiDist2", "title": "Pairwise Chi-squared distances", "topics": [ "chiDist2" ] }, { "page": "concordanceNetworkNMI", "title": "Concordance Network NMI calculation", "topics": [ "concordanceNetworkNMI" ] }, { "page": "Data1", "title": "Data1", "topics": [ "Data1" ] }, { "page": "Data2", "title": "Data2", "topics": [ "Data2" ] }, { "page": "dataL", "title": "dataL", "topics": [ "dataL" ] }, { "page": "displayClusters", "title": "Plot given similarity matrix by clusters", "topics": [ "displayClusters" ] }, { "page": "displayClustersWithHeatmap", "title": "Display the similarity matrix by clusters with some sample information", "topics": [ "displayClustersWithHeatmap" ] }, { "page": "dist2", "title": "Pairwise squared Euclidean distances", "topics": [ "dist2" ] }, { "page": "estimateNumberOfClustersGivenGraph", "title": "Estimate Number Of Clusters Given Graph", "topics": [ "estimateNumberOfClustersGivenGraph" ] }, { "page": "getColorsForGroups", "title": "Obtaining a vector of colors from a numeric vector of group", "topics": [ "getColorsForGroups" ] }, { "page": "groupPredict", "title": "Group Predict", "topics": [ "groupPredict" ] }, { "page": "heatmapPlus", "title": "Display heatmap for clusters", "topics": [ "heatmapPlus" ] }, { "page": "label", "title": "Labels for dataL dataset", "topics": [ "label" ] }, { "page": "plotAlluvial", "title": "Plot Alluvial", "topics": [ "plotAlluvial" ] }, { "page": "rankFeaturesByNMI", "title": "Rank Features by NMI", "topics": [ "rankFeaturesByNMI" ] }, { "page": "SNF", "title": "Similarity Network Fusion", "topics": [ "SNF" ] }, { "page": "spectralClustering", "title": "Spectral Clustering", "topics": [ "spectralClustering" ] }, { "page": "standardNormalization", "title": "Standard Normalization", "topics": [ "standardNormalization" ] } ], "_rundeps": [ "alluvial", "ExPosition", "prettyGraphs" ], "_score": 6.125125877204098, "_indexed": true, "_nocasepkg": "snftool", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.3.1", "date": "2026-07-23T07:37:55.000Z", "distro": "resolute", "commit": "64ade299d2cd10e6605063637fed1103564d0ea4", "fileid": "https://r2.ropensci.org/08f4d538169607b36986d0397c19fb5b45acfb9b1f1e27850bdffe2dad59c8de", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/29988573878" }, { "r": "4.6.1", "os": "linux", "version": "2.3.1", "date": "2026-07-23T07:37:57.000Z", "distro": "resolute", "commit": "64ade299d2cd10e6605063637fed1103564d0ea4", "fileid": "https://r2.ropensci.org/8dac444cb258d325d03d7812c4685221770a4e6a555a191236f2ee98b732fa96", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/29988573878" }, { "r": "4.6.0", "os": "wasm", "version": "2.3.1", "date": "2026-07-23T07:37:55.000Z", "commit": "64ade299d2cd10e6605063637fed1103564d0ea4", "fileid": "https://r2.ropensci.org/b183f239d20e3621574a5056cf234ed7d5b78754d1e9bf73795dd32dc1d9cd86", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/29988573878" }, { "r": "4.7.0", "os": "win", "version": "2.3.1", "date": "2026-07-23T07:37:25.000Z", "commit": "64ade299d2cd10e6605063637fed1103564d0ea4", "fileid": "https://r2.ropensci.org/576abd2241fb0926b69daeb632e4cdf352c6338361dadec639c79a55cc5bbeca", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/29988573878" } ] }