Package: SCBiclust 1.0.1
Erika S. Helgeson
SCBiclust: Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the submatrix differ from those not contained in submatrix, using a two-step method. In the first step, observations in the bicluster are identified to maximize the sum of weighted between cluster feature differences. The method is described in Helgeson et al. (2020) <doi:10.1111/biom.13136>. 'SCBiclust' can be used to identify biclusters which differ based on feature means, feature variances, or more general differences.
Authors:
SCBiclust_1.0.1.tar.gz
SCBiclust_1.0.1.tar.gz(r-4.5-noble)SCBiclust_1.0.1.tar.gz(r-4.4-noble)
SCBiclust_1.0.1.tgz(r-4.4-emscripten)SCBiclust_1.0.1.tgz(r-4.3-emscripten)
SCBiclust.pdf |SCBiclust.html✨
SCBiclust/json (API)
# Install 'SCBiclust' in R: |
install.packages('SCBiclust', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:33362c5804. Checks:OK: 1 NOTE: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 20 2024 |
R-4.5-linux | NOTE | Nov 20 2024 |
Exports:PermBiclust.beta.ksPermBiclust.sigclustPermBiclust.sigclust_stopPermHclust.sigclustVarPermBiclust.chisqdiff
Readme and manuals
Help Manual
Help page | Topics |
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'SCBiclust' method for identifying means-based biclusters with Kolmogorov-Smirnov test of feature weights | PermBiclust.beta.ks |
'SCBiclust' method for identifying means-based biclusters | PermBiclust.sigclust |
'SCBiclust' method for identifying means-based biclusters with optional cluster significance testing | PermBiclust.sigclust_stop |
'SCBiclust' method for identifying hierarchically clustered biclusters | PermHclust.sigclust |
'SCBiclust' method for identifying variance-based biclusters | VarPermBiclust.chisqdiff |