Package: SCBiclust 1.0.2

Erika S. Helgeson

SCBiclust: Identifies Mean, Variance, and Hierarchically Clustered Biclusters

Identifies a bicluster, a submatrix of the data such that the features and observations within the submatrix differ from those not contained in submatrix, using a two-step method. In the first step, observations in the bicluster are identified to maximize the sum of weighted between cluster feature differences. The method is described in Helgeson et al. (2020) <doi:10.1111/biom.13136>. 'SCBiclust' can be used to identify biclusters which differ based on feature means, feature variances, or more general differences.

Authors:Erika S. Helgeson [aut, cre], Qian Liu [aut], Guanhua Chen [aut], Michael R. Kosorok [aut], Eric Bair [aut]

SCBiclust_1.0.2.tar.gz
SCBiclust_1.0.2.tar.gz(r-4.7-any)SCBiclust_1.0.2.tar.gz(r-4.6-any)
SCBiclust_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SCBiclust/json (API)

# Install 'SCBiclust' in R:
install.packages('SCBiclust', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 scripts 230 downloads 5 exports 2 dependencies

Last updated from:91fd48cb2d. Checks:4 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK105
source / vignettesOK155
linux-release-x86_64OK112
wasm-releaseOK108

Exports:PermBiclust.beta.ksPermBiclust.sigclustPermBiclust.sigclust_stopPermHclust.sigclustVarPermBiclust.chisqdiff

Dependencies:sigclustsparcl