Package: SCBiclust 1.0.1

Erika S. Helgeson

SCBiclust: Identifies Mean, Variance, and Hierarchically Clustered Biclusters

Identifies a bicluster, a submatrix of the data such that the features and observations within the submatrix differ from those not contained in submatrix, using a two-step method. In the first step, observations in the bicluster are identified to maximize the sum of weighted between cluster feature differences. The method is described in Helgeson et al. (2020) <doi:10.1111/biom.13136>. 'SCBiclust' can be used to identify biclusters which differ based on feature means, feature variances, or more general differences.

Authors:Erika S. Helgeson, Qian Liu, Guanhua Chen, Michael R. Kosorok , and Eric Bair

SCBiclust_1.0.1.tar.gz
SCBiclust_1.0.1.tar.gz(r-4.5-noble)SCBiclust_1.0.1.tar.gz(r-4.4-noble)
SCBiclust_1.0.1.tgz(r-4.4-emscripten)SCBiclust_1.0.1.tgz(r-4.3-emscripten)
SCBiclust.pdf |SCBiclust.html✨
SCBiclust/json (API)

# Install 'SCBiclust' in R:
install.packages('SCBiclust', repos = 'https://cloud.r-project.org')

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 146 downloads 5 exports 2 dependencies

Last updated 3 years agofrom:33362c5804. Checks:1 OK, 2 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 20 2025
R-4.5-linuxNOTEMar 20 2025
R-4.4-linuxNOTEMar 20 2025

Exports:PermBiclust.beta.ksPermBiclust.sigclustPermBiclust.sigclust_stopPermHclust.sigclustVarPermBiclust.chisqdiff

Dependencies:sigclustsparcl

Citation

To cite package ‘SCBiclust’ in publications use:

Helgeson ES, Liu Q, Chen G, Kosorok MR, Bair aE (2022). SCBiclust: Identifies Mean, Variance, and Hierarchically Clustered Biclusters. R package version 1.0.1, https://CRAN.R-project.org/package=SCBiclust.

ATTENTION: This citation information has been auto-generated from the package DESCRIPTION file and may need manual editing, see ‘help("citation")’.

Corresponding BibTeX entry: 

  @Manual{,
    title = {SCBiclust: Identifies Mean, Variance, and Hierarchically
      Clustered Biclusters},
    author = {Erika S. Helgeson and Qian Liu and Guanhua Chen and
      Michael R. Kosorok and and Eric Bair},
    year = {2022},
    note = {R package version 1.0.1},
    url = {https://CRAN.R-project.org/package=SCBiclust},
  }