{ "_id": "6aafc54c3d719c1f84081c65", "Package": "SCBiclust", "Title": "Identifies Mean, Variance, and Hierarchically Clustered\nBiclusters", "Version": "1.0.2", "Authors@R": "c(person(given = c(\"Erika\", \"S.\"),\nfamily = \"Helgeson\",\nrole = c(\"aut\", \"cre\"),\nemail = \"helge@umn.edu\"),\nperson(given = \"Qian\",\nfamily = \"Liu\",\nrole = \"aut\"),\nperson(given = \"Guanhua\",\nfamily = \"Chen\",\nrole = \"aut\"),\nperson(given = c(\"Michael\", \"R.\"),\nfamily = \"Kosorok\",\nrole = \"aut\"),\nperson(given = \"Eric\",\nfamily = \"Bair\",\nrole = \"aut\"))", "Description": "Identifies a bicluster, a submatrix of the data such that\nthe features and observations within the submatrix differ from\nthose not contained in submatrix, using a two-step method. In\nthe first step, observations in the bicluster are identified to\nmaximize the sum of weighted between cluster feature\ndifferences. The method is described in Helgeson et al. (2020)\n. 'SCBiclust' can be used to identify\nbiclusters which differ based on feature means, feature\nvariances, or more general differences.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-20 11:34:18 UTC", "User": "root" }, "Author": "Erika S. Helgeson [aut, cre], Qian Liu [aut], Guanhua Chen\n[aut], Michael R. Kosorok [aut], Eric Bair [aut]", "Maintainer": "Erika S. Helgeson ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-08-20 22:34:54 UTC", "RemoteUrl": "https://github.com/cran/SCBiclust", "RemoteRef": "HEAD", "RemoteSha": "91fd48cb2dc98eb9cecf885234cc1748784516f8", "_user": "cran", "_type": "src", "_file": "SCBiclust_1.0.2.tar.gz", "_fileid": "https://r2.ropensci.org/17f6e7cb085f002b862339a92f9edf90006eae9abdea275307ebd7c00aa96321", "_filesize": 165348, "_sha256": "17f6e7cb085f002b862339a92f9edf90006eae9abdea275307ebd7c00aa96321", "_expires": "2026-12-29T11:36:42.000Z", "_created": "2026-09-20T11:34:18.000Z", "_published": "2026-09-20T11:36:44.084Z", "_jobs": [ { "job": 106071504921, "time": 111, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10604393085" }, { "job": 106071504905, "time": 107, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10603878310" }, { "job": 106071103356, "time": 201, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10604358018" }, { "job": 106071504881, "time": 102, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10603878309" }, { "job": 106071504917, "time": 64, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10604647615" }, { "job": 106071504893, "time": 67, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10604512701" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/cran/actions/runs/35508047687", "_status": "success", "_upstream": "https://github.com/cran/SCBiclust", "_commit": { "id": "91fd48cb2dc98eb9cecf885234cc1748784516f8", "author": "Erika S. Helgeson ", "committer": "cran-robot ", "message": "version 1.0.2\n", "time": 1755729294 }, "_maintainer": { "name": "Erika S. Helgeson", "email": "helge@umn.edu" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "sigclust", "role": "Imports" }, { "package": "sparcl", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 630, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 216, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SCBiclust" }, "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/SCBiclust.html", "LICENSE" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.0.0", "date": "2019-04-02" }, { "version": "1.0.1", "date": "2022-06-10" }, { "version": "1.0.2", "date": "2025-08-20" } ], "_exports": [ "PermBiclust.beta.ks", "PermBiclust.sigclust", "PermBiclust.sigclust_stop", "PermHclust.sigclust", "VarPermBiclust.chisqdiff" ], "_help": [ { "page": "PermBiclust.beta.ks", "title": "'SCBiclust' method for identifying means-based biclusters with Kolmogorov-Smirnov test of feature weights", "topics": [ "PermBiclust.beta.ks" ] }, { "page": "PermBiclust.sigclust", "title": "'SCBiclust' method for identifying means-based biclusters", "topics": [ "PermBiclust.sigclust" ] }, { "page": "PermBiclust.sigclust_stop", "title": "'SCBiclust' method for identifying means-based biclusters with optional cluster significance testing", "topics": [ "PermBiclust.sigclust_stop" ] }, { "page": "PermHclust.sigclust", "title": "'SCBiclust' method for identifying hierarchically clustered biclusters", "topics": [ "PermHclust.sigclust" ] }, { "page": "VarPermBiclust.chisqdiff", "title": "'SCBiclust' method for identifying variance-based biclusters", "topics": [ "VarPermBiclust.chisqdiff" ] } ], "_rundeps": [ "sigclust", "sparcl" ], "_score": 1, "_indexed": true, "_nocasepkg": "scbiclust", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.2", "date": "2026-09-20T11:36:11.000Z", "distro": "resolute", "commit": "91fd48cb2dc98eb9cecf885234cc1748784516f8", "fileid": "https://r2.ropensci.org/fe858030d3b6df2a92a25bae77ee376453b614f6f427dd0174accde8a4f478f6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/35508047687" }, { "r": "4.6.1", "os": "linux", "version": "1.0.2", "date": "2026-09-20T11:36:07.000Z", "distro": "resolute", "commit": "91fd48cb2dc98eb9cecf885234cc1748784516f8", "fileid": "https://r2.ropensci.org/fdb61c0715e7945730dd1b25bf496f97a9c7f225f28ae7b4971f43137ebf9ce8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/35508047687" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.2", "date": "2026-09-20T11:36:16.000Z", "commit": "91fd48cb2dc98eb9cecf885234cc1748784516f8", "fileid": "https://r2.ropensci.org/aa7e572f3fa21913fd9a1358f268b149fd872a214a0824d4be280664e3ea976f", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/35508047687" }, { "r": "4.7.0", "os": "win", "version": "1.0.2", "date": "2026-09-20T11:35:18.000Z", "commit": "91fd48cb2dc98eb9cecf885234cc1748784516f8", "fileid": "https://r2.ropensci.org/eeb9cdb3b4874f8f2895859cf7a57971b63ddcf0addde1e13319f4358f6773bf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/35508047687" }, { "r": "4.6.1", "os": "win", "version": "1.0.2", "date": "2026-09-20T11:35:20.000Z", "commit": "91fd48cb2dc98eb9cecf885234cc1748784516f8", "fileid": "https://r2.ropensci.org/4d8b573de51195acbbf5d331fdd1e631f0676fc3d810595b9f7966ca1315a439", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/35508047687" } ] }