Package: SAFEMCN 1.0.0

Xiaotong Xu

SAFEMCN: Network Topology Parameter Analysis with Rarefaction

Calculate network topology parameters from Operational Taxonomic Unit (OTU) tables with customizable correlation thresholds, parallel processing options, and visualization capabilities including trend fitting, prediction of future sample sizes, and lag-1 autocorrelation (AR1) analysis. Methods are based on co-occurrence network construction via correlation thresholds and graph-theoretic metrics computed with 'igraph'.

Authors:Xiaotong Xu [aut, cre], Yue Zheng [cph]

SAFEMCN_1.0.0.tar.gz
SAFEMCN_1.0.0.zip(r-4.7-any)SAFEMCN_1.0.0.zip(r-4.6-any)
SAFEMCN_1.0.0.tar.gz(r-4.7-any)SAFEMCN_1.0.0.tar.gz(r-4.6-any)
SAFEMCN_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SAFEMCN/json (API)

# Install 'SAFEMCN' in R:
install.packages('SAFEMCN', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 303 downloads 1 exports 59 dependencies

Last updated from:9be087a50f. Checks:6 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK180
source / vignettesOK168
linux-releaseOK133
windows-develOK80
windows-releaseOK80
wasm-releaseOK142

Exports:analyze_network_topology

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacecpp11data.tabledigestevaluatefarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsigraphisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMatrixmemoisemimennetpkgconfigR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapiS7sassscalesstringistringrtinytexvctrsviridisLitewithrxfunyaml