Package: SAFEMCN 1.0.0

Xiaotong Xu

SAFEMCN: Network Topology Parameter Analysis with Rarefaction

Calculate network topology parameters from Operational Taxonomic Unit (OTU) tables with customizable correlation thresholds, parallel processing options, and visualization capabilities including trend fitting, prediction of future sample sizes, and lag-1 autocorrelation (AR1) analysis. Methods are based on co-occurrence network construction via correlation thresholds and graph-theoretic metrics computed with 'igraph'.

Authors:Xiaotong Xu [aut, cre], Yue Zheng [cph]

SAFEMCN_1.0.0.tar.gz
SAFEMCN_1.0.0.tar.gz(r-4.7-any)SAFEMCN_1.0.0.tar.gz(r-4.6-any)
SAFEMCN_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SAFEMCN/json (API)

# Install 'SAFEMCN' in R:
install.packages('SAFEMCN', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 exports 59 dependencies

Last updated from:9be087a50f. Checks:4 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK118
source / vignettesOK182
linux-release-x86_64OK258
wasm-releaseOK123

Exports:analyze_network_topology

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacecpp11data.tabledigestevaluatefarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsigraphisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMatrixmemoisemimennetpkgconfigR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapiS7sassscalesstringistringrtinytexvctrsviridisLitewithrxfunyaml