Package: RCytoGPS 1.2.14

Kevin R. Coombes

RCytoGPS: Using Cytogenetics Data in R

Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then import the results into R for further analysis and graphing.

Authors:Kevin R. Coombes [aut, cre], Dwayne Tally [aut]

RCytoGPS_1.2.14.tar.gz
RCytoGPS_1.2.14.zip(r-4.7-any)RCytoGPS_1.2.14.zip(r-4.6-any)
RCytoGPS_1.2.14.tar.gz(r-4.7-any)RCytoGPS_1.2.14.tar.gz(r-4.6-any)
RCytoGPS_1.2.14.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RCytoGPS/json (API)

# Install 'RCytoGPS' in R:
install.packages('RCytoGPS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.98 score 16 scripts 439 downloads 7 exports 1 dependencies

Last updated from:fe243704c0. Checks:2 NOTE, 4 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE159
source / vignettesOK224
linux-releaseNOTE180
windows-develOK109
windows-releaseOK132
wasm-releaseOK127

Exports:barplotChromosomeCytobandDataimageprecleanreadLGFsummary

Dependencies:rjson

RCytoGPS: Working With LGF-Models of Karyotype in R
Introduction | Setup | Extracting JSON data and formatting to LGF model | Extracting the cytoband locations, and the frequency data | Turning CytoData into an S4 Object | Generating Graphs | Plotting Cytoband Data Along the Genome | Plotting Cytoband-Level Data Along One Chromosome | Idiograms | One Data Column | More Data Columns | Gallery | Appendix
Rendered fromIntroRCytoGPS.Rmdusingknitr::rmarkdown

Last update: 2026-07-06
Started: 2020-11-19

RCytoGPS Gallery
Introduction | Plotting Cytoband Data Along the Genome | Single Chromosome Plots | Plotting Cytoband-Level Data Along One Chromosome | Plotting Cytoband-Level Data Along Both Sides of One Chromosome | Idiograms | One Data Column | Contrasting Two Data Columns | Many Data Columns | Appendix
Rendered fromGallery.Rmdusingknitr::rmarkdown

Last update: 2021-09-17
Started: 2020-11-19

Readme and manuals

Help Manual

Help pageTopics
The 'Chromosome' ClassChromosome Chromosome-class image,Chromosome-method
Example Cytoband Datacytoband-data cytoData
The 'CytobandData' ClassCytobandData CytobandData-class summary,CytobandData-method
Idiogram Graphsbarplot,CytobandData-method Idiogram Graphs image,CytobandData-method
Cytoband LocationscytobandLocations idiocolors
Pre-clean Karyotypespreclean
Extracting LGF karyotype data from JSON filesreadLGF