Package: RCytoGPS 1.2.7

Kevin R. Coombes

RCytoGPS: Using Cytogenetics Data in R

Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then import the results into R for further analysis and graphing.

Authors:Kevin R. Coombes [aut, cre], Dwayne Tally [aut]

RCytoGPS_1.2.7.tar.gz
RCytoGPS_1.2.7.tar.gz(r-4.5-noble)RCytoGPS_1.2.7.tar.gz(r-4.4-noble)
RCytoGPS_1.2.7.tgz(r-4.4-emscripten)RCytoGPS_1.2.7.tgz(r-4.3-emscripten)
RCytoGPS.pdf |RCytoGPS.html✨
RCytoGPS/json (API)
NEWS

# Install 'RCytoGPS' in R:

install.packages('RCytoGPS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://r-forge.r-project.org/projects/oompa

Datasets:

cytoData - Example Cytoband Data
cytobandLocations - Cytoband Locations
idiocolors - Cytoband Locations

2.53 score 17 scripts 163 downloads 7 exports 1 dependencies

Last updated 3 months agofrom:8596692e96. Checks:OK: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Dec 04 2024
R-4.5-linux	OK	Dec 04 2024

Exports:barplot Chromosome CytobandData image preclean readLGF summary

Dependencies:rjson

RCytoGPS: Working With LGF-Models of Karyotype in R

Dwayne Tally, Zachary B. Abrams, and Kevin R. Coombes

Rendered fromIntroRCytoGPS.Rmdusingknitr::rmarkdownon Dec 04 2024.

Last update: 2021-09-17
Started: 2020-11-19

RCytoGPS Gallery

Dwayne Tally, Zachary B. Abrams, and Kevin R. Coombes

Rendered fromGallery.Rmdusingknitr::rmarkdownon Dec 04 2024.

Last update: 2021-09-17
Started: 2020-11-19

Citation

Readme and manuals

Help Manual

Help page	Topics
The 'Chromosome' Class	Chromosome Chromosome-class image,Chromosome-method
Example Cytoband Data	cytoband-data cytoData
The 'CytobandData' Class	CytobandData CytobandData-class summary,CytobandData-method
Idiogram Graphs	barplot,CytobandData-method Idiogram Graphs image,CytobandData-method
Cytoband Locations	cytobandLocations idiocolors
Pre-clean Karyotypes	preclean
Extracting LGF karyotype data from JSON files	readLGF