Introduction | Setup | Extracting JSON data and formatting to LGF model | Extracting the cytoband locations, and the frequency data | Turning CytoData into an S4 Object | Generating Graphs | Plotting Cytoband Data Along the Genome | Plotting Cytoband-Level Data Along One Chromosome | Idiograms | One Data Column | More Data Columns | Gallery | Appendix
Package: RCytoGPS 1.2.13
Kevin R. Coombes
RCytoGPS: Using Cytogenetics Data in R
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then import the results into R for further analysis and graphing.
Authors:
RCytoGPS_1.2.13.tar.gz
RCytoGPS_1.2.13.tar.gz(r-4.7-any)RCytoGPS_1.2.13.tar.gz(r-4.6-any)
RCytoGPS_1.2.13.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RCytoGPS/json (API)
| # Install 'RCytoGPS' in R: |
| install.packages('RCytoGPS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://r-forge.r-project.org/projects/oompa
Datasets:
- cytobandLocations - Cytoband Locations
- cytoData - Example Cytoband Data
- idiocolors - Cytoband Locations
Last updated from:ca1ec5e684. Checks:2 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 183 | ||
| source / vignettes | OK | 196 | ||
| linux-release-x86_64 | NOTE | 200 | ||
| wasm-release | OK | 144 |
Exports:barplotChromosomeCytobandDataimageprecleanreadLGFsummary
Dependencies:rjson
RCytoGPS: Working With LGF-Models of Karyotype in R
Last update: 2026-07-06
Started: 2020-11-19
RCytoGPS Gallery
Introduction | Plotting Cytoband Data Along the Genome | Single Chromosome Plots | Plotting Cytoband-Level Data Along One Chromosome | Plotting Cytoband-Level Data Along Both Sides of One Chromosome | Idiograms | One Data Column | Contrasting Two Data Columns | Many Data Columns | Appendix
Last update: 2021-09-17
Started: 2020-11-19
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The 'Chromosome' Class | Chromosome Chromosome-class image,Chromosome-method |
| Example Cytoband Data | cytoband-data cytoData |
| The 'CytobandData' Class | CytobandData CytobandData-class summary,CytobandData-method |
| Idiogram Graphs | barplot,CytobandData-method Idiogram Graphs image,CytobandData-method |
| Cytoband Locations | cytobandLocations idiocolors |
| Pre-clean Karyotypes | preclean |
| Extracting LGF karyotype data from JSON files | readLGF |