{ "_id": "6a1962eeacfb0bcc41de5ec1", "Package": "RCytoGPS", "Version": "1.2.10", "Date": "2026-01-27", "Title": "Using Cytogenetics Data in R", "Authors@R": "c(person(given = c(\"Kevin\", \"R.\"),\nfamily = \"Coombes\",\nrole = c(\"aut\", \"cre\"),\nemail = \"krc@silicovore.com\"),\nperson(given = \"Dwayne\",\nfamily = \"Tally\",\nrole = \"aut\"))", "Description": "Defines classes and methods to process text-based\ncytogenetics using the CytoGPS web site, then import the\nresults into R for further analysis and graphing.", "VignetteBuilder": "knitr", "License": "Apache License (== 2.0)", "URL": "http://oompa.r-forge.r-project.org/", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 09:53:36 UTC", "User": "root" }, "Author": "Kevin R. Coombes [aut, cre], Dwayne Tally [aut]", "Maintainer": "Kevin R. Coombes ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2026-01-29 12:30:02 UTC", "RemoteUrl": "https://github.com/cran/RCytoGPS", "RemoteRef": "HEAD", "RemoteSha": "26edfef463b39cb9f05fe28fdeb91ee5030ec6ec", "MD5sum": "1dd96a10f2d15299f9c7a90ef8c0733b", "_user": "cran", "_type": "src", "_file": "RCytoGPS_1.2.10.tar.gz", "_fileid": "4dea2777f2ef83067fa52b44babea1fc890bc9a87b37d27bb15418fce7944fa6", "_filesize": 982044, "_sha256": "4dea2777f2ef83067fa52b44babea1fc890bc9a87b37d27bb15418fce7944fa6", "_created": "2026-05-29T09:53:36.000Z", "_published": "2026-05-29T09:57:02.388Z", "_distro": "noble", "_jobs": [ { "job": 78478390647, "time": 150, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7288020036" }, { "job": 78478390665, "time": 153, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7288020920" }, { "job": 78477841975, "time": 214, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7287975025" }, { "job": 78478390553, "time": 124, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7288012840" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26630477372", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/RCytoGPS", "_commit": { "id": "26edfef463b39cb9f05fe28fdeb91ee5030ec6ec", "author": "Kevin R. Coombes ", "committer": "cran-robot ", "message": "version 1.2.10\n", "time": 1769689802 }, "_maintainer": { "name": "Kevin R. Coombes", "email": "krc@silicovore.com" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.4", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "rjson", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "Mercator", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2026-05", "n": 1 } ], "_tags": [ { "name": "1.2.10", "date": "2026-01-29" } ], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 141, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/RCytoGPS" }, "_devurl": "https://github.com/r-forge/oompa", "_searchresults": 18, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/RCytoGPS.html", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.0.1", "date": "2020-11-19" }, { "version": "1.1.1", "date": "2021-02-10" }, { "version": "1.2.1", "date": "2021-09-17" }, { "version": "1.2.5", "date": "2023-11-27" }, { "version": "1.2.7", "date": "2024-09-04" }, { "version": "1.2.9", "date": "2025-04-08" }, { "version": "1.2.10", "date": "2026-01-29" } ], "_exports": [ "barplot", "Chromosome", "CytobandData", "image", "preclean", "readLGF", "summary" ], "_datasets": [ { "name": "cytobandLocations", "title": "Cytoband Locations", "object": "cytobandLocations", "file": "cytobandLocations.rda", "class": [ "data.frame" ], "fields": [ "Chromosome", "loc.start", "loc.end", "Band", "Stain" ], "rows": 868, "table": true, "tojson": true }, { "name": "cytoData", "title": "Example Cytoband Data", "object": "cytoData", "file": "cytoData.rda", "class": [ "data.frame" ], "fields": [ "Chromosome", "loc.start", "loc.end", "Band", "Arm", "A.Loss", "A.Gain", "A.Fusion", "B.Loss", "B.Gain", "B.Fusion", "C.Loss", "C.Gain", "C.Fusion" ], "rows": 868, "table": true, "tojson": true }, { "name": "idiocolors", "title": "Cytoband Locations", "object": "cytobandLocations", "file": "cytobandLocations.rda", "class": [ "character" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "06-Chromosome", "title": "The 'Chromosome' Class", "topics": [ "Chromosome", "Chromosome-class", "image,Chromosome-method" ] }, { "page": "05-cytoData", "title": "Example Cytoband Data", "topics": [ "cytoband-data", "cytoData" ] }, { "page": "03-CytobandData", "title": "The 'CytobandData' Class", "topics": [ "CytobandData", "CytobandData-class", "summary,CytobandData-method" ] }, { "page": "04-Image", "title": "Idiogram Graphs", "topics": [ "barplot,CytobandData-method", "Idiogram Graphs", "image,CytobandData-method" ] }, { "page": "01-cytobandLocations", "title": "Cytoband Locations", "topics": [ "cytobandLocations", "idiocolors" ] }, { "page": "07-preclean", "title": "Pre-clean Karyotypes", "topics": [ "preclean" ] }, { "page": "02-readLGF", "title": "Extracting LGF karyotype data from JSON files", "topics": [ "readLGF" ] } ], "_rundeps": [ "rjson" ], "_vignettes": [ { "source": "IntroRCytoGPS.Rmd", "filename": "IntroRCytoGPS.html", "title": "RCytoGPS: Working With LGF-Models of Karyotype in R", "author": "Dwayne Tally, Zachary B. Abrams, and Kevin R. Coombes", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Setup", "Extracting JSON data and formatting to LGF model", "Extracting the cytoband locations, and the frequency data", "Turning CytoData into an S4 Object", "Generating Graphs", "Plotting Cytoband Data Along the Genome", "Plotting Cytoband-Level Data Along One Chromosome", "Idiograms", "One Data Column", "More Data Columns", "Gallery", "Appendix" ], "created": "2020-11-19 09:30:02", "modified": "2021-09-17 13:40:02", "commits": 2 }, { "source": "Gallery.Rmd", "filename": "Gallery.html", "title": "RCytoGPS Gallery", "author": "Dwayne Tally, Zachary B. Abrams, and Kevin R. Coombes", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Plotting Cytoband Data Along the Genome", "Single Chromosome Plots", "Plotting Cytoband-Level Data Along One Chromosome", "Plotting Cytoband-Level Data Along Both Sides of One Chromosome", "Idiograms", "One Data Column", "Contrasting Two Data Columns", "Many Data Columns", "Appendix" ], "created": "2020-11-19 09:30:02", "modified": "2021-09-17 13:40:02", "commits": 2 } ], "_score": 2.5563025007672873, "_indexed": true, "_nocasepkg": "rcytogps", "_universes": [ "cran", "r-forge" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.10", "date": "2026-05-29T09:56:08.000Z", "distro": "noble", "commit": "26edfef463b39cb9f05fe28fdeb91ee5030ec6ec", "fileid": "d7a61b092352334b758e89744206d6af5bfd0a1a1caec38b9c16dadb39a886ce", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/26630477372" }, { "r": "4.6.0", "os": "linux", "version": "1.2.10", "date": "2026-05-29T09:56:10.000Z", "distro": "noble", "commit": "26edfef463b39cb9f05fe28fdeb91ee5030ec6ec", "fileid": "332be74bbcc2acd0b42a17b46b2e565055851bb248507a4fc541a11a34930877", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/26630477372" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.10", "date": "2026-05-29T09:56:13.000Z", "commit": "26edfef463b39cb9f05fe28fdeb91ee5030ec6ec", "fileid": "caf73b09a166b8adc2f3279858f271267f05e56ca80cd906a93911c6c072e1fc", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/26630477372" } ] }