Package: PRANA 1.0.6

Seungjun Ahn

PRANA: Pseudo-Value Regression Approach for Network Analysis (PRANA)

A novel pseudo-value regression approach for the differential co-expression network analysis in expression data, which can incorporate additional clinical variables in the model. This is a direct regression modeling for the differential network analysis, and it is therefore computationally amenable for the most users. The full methodological details can be found in Ahn S et al (2023) <doi:10.1186/s12859-022-05123-w>.

Authors:Seungjun Ahn [cre, aut, trl], Somnath Datta [ctb, ths]

PRANA_1.0.6.tar.gz
PRANA_1.0.6.tar.gz(r-4.5-noble)PRANA_1.0.6.tar.gz(r-4.4-noble)
PRANA_1.0.6.tgz(r-4.4-emscripten)PRANA_1.0.6.tgz(r-4.3-emscripten)
PRANA.pdf |PRANA.html
PRANA/json (API)

# Install 'PRANA' in R:
install.packages('PRANA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 4 scripts 160 downloads 10 exports 20 dependencies

Last updated 3 months agofrom:3ebe5d0257. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 22 2024
R-4.5-linuxOKDec 22 2024

Exports:adjpvaladjpval_specific_varcoeffcoeff_specific_varEBSPRANArun_aracnesigDCGnamessigDCGtabthetahats

Dependencies:cliDEoptimRdplyrfansigenericsglueinfotheolifecyclemagrittrminetpillarpkgconfigR6rlangrobustbasetibbletidyselectutf8vctrswithr

A User Manual for PRANA

Rendered fromUserManualPRANA.Rmdusingknitr::rmarkdownon Dec 22 2024.

Last update: 2024-07-28
Started: 2023-03-29

Readme and manuals

Help Manual

Help pageTopics
adjpvaladjpval
adjpval_specific_varadjpval_specific_var
coeffcoeff
coeff_specific_varcoeff_specific_var
Chronic Obstructive Pulmonary Disease (COPD) datacombinedCOPDdat_RGO
EBSEBS
PRANAPRANA
run_aracnerun_aracne
sigDCGnamessigDCGnames
sigDCGtabsigDCGtab
thetahatsthetahats