Requirements | Example: Load the COPDGene study data from PRANA R package: | Data processing for the example data from COPDGene study: | Apply the PRANA: | Some supporting features after the use of PRANA: | References
Package: PRANA 1.0.6
Seungjun Ahn
PRANA: Pseudo-Value Regression Approach for Network Analysis (PRANA)
A novel pseudo-value regression approach for the differential co-expression network analysis in expression data, which can incorporate additional clinical variables in the model. This is a direct regression modeling for the differential network analysis, and it is therefore computationally amenable for the most users. The full methodological details can be found in Ahn S et al (2023) <doi:10.1186/s12859-022-05123-w>.
Authors:
PRANA_1.0.6.tar.gz
PRANA_1.0.6.tar.gz(r-4.7-any)PRANA_1.0.6.tar.gz(r-4.6-any)
PRANA_1.0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PRANA/json (API)
| # Install 'PRANA' in R: |
| install.packages('PRANA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- combinedCOPDdat_RGO - Chronic Obstructive Pulmonary Disease (COPD) data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:3ebe5d0257. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 181 | ||
| source / vignettes | OK | 174 | ||
| linux-release-x86_64 | OK | 150 | ||
| wasm-release | OK | 110 |
Exports:adjpvaladjpval_specific_varcoeffcoeff_specific_varEBSPRANArun_aracnesigDCGnamessigDCGtabthetahats
Dependencies:cliDEoptimRdplyrgenericsglueinfotheolifecyclemagrittrminetpillarpkgconfigR6rlangrobustbasetibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| adjpval | adjpval |
| adjpval_specific_var | adjpval_specific_var |
| coeff | coeff |
| coeff_specific_var | coeff_specific_var |
| Chronic Obstructive Pulmonary Disease (COPD) data | combinedCOPDdat_RGO |
| EBS | EBS |
| PRANA | PRANA |
| run_aracne | run_aracne |
| sigDCGnames | sigDCGnames |
| sigDCGtab | sigDCGtab |
| thetahats | thetahats |