{
  "_id": "6ac0d70391601a2ad2999728",
  "Package": "PRANA",
  "Type": "Package",
  "Title": "Pseudo-Value Regression Approach for Network Analysis (PRANA)",
  "Version": "1.0.6",
  "Authors@R": "c(\nperson(\"Seungjun\", \"Ahn\", email = \"seungjun.ahn@mountsinai.org\",\nrole = c(\"cre\", \"aut\", \"trl\"),\ncomment = c(ORCID = \"0000-0002-4816-8924\")),\nperson(\"Somnath\", \"Datta\", email = \"somnath.datta@ufl.edu\", role = c(\"ctb\", \"ths\")))",
  "Description": "A novel pseudo-value regression approach for the\ndifferential co-expression network analysis in expression data,\nwhich can incorporate additional clinical variables in the\nmodel. This is a direct regression modeling for the\ndifferential network analysis, and it is therefore\ncomputationally amenable for the most users. The full\nmethodological details can be found in Ahn S et al (2023)\n<doi:10.1186/s12859-022-05123-w>.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.2.1",
  "biocViews": "",
  "Language": "en-US",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-03 10:17:35 UTC",
    "User": "root"
  },
  "Author": "Seungjun Ahn [cre, aut, trl]\n(<https://orcid.org/0000-0002-4816-8924>), Somnath Datta [ctb,\nths]",
  "Maintainer": "Seungjun Ahn <seungjun.ahn@mountsinai.org>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2024-09-23 02:59:40 UTC",
  "RemoteUrl": "https://github.com/cran/PRANA",
  "RemoteRef": "HEAD",
  "RemoteSha": "3ebe5d0257df9b8cc76532457f383b3e1c25e835",
  "_user": "cran",
  "_type": "src",
  "_file": "PRANA_1.0.6.tar.gz",
  "_fileid": "https://r2.ropensci.org/655fa572e4771351e5936bc9f2a0a1c280e26f8fe318a7fa1064f3c2048a3c68",
  "_filesize": 203547,
  "_sha256": "655fa572e4771351e5936bc9f2a0a1c280e26f8fe318a7fa1064f3c2048a3c68",
  "_expires": "2027-01-11T10:20:50.000Z",
  "_created": "2026-10-03T10:17:35.000Z",
  "_published": "2026-10-03T10:20:51.857Z",
  "_jobs": [
    {
      "job": 111182688881,
      "time": 157,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11270769186"
    },
    {
      "job": 111182688798,
      "time": 139,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11271600977"
    },
    {
      "job": 111182128068,
      "time": 202,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11272035063"
    },
    {
      "job": 111182688784,
      "time": 92,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11270644425"
    },
    {
      "job": 111182688805,
      "time": 106,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11272050214"
    },
    {
      "job": 111182688844,
      "time": 96,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11271406401"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/37115721031",
  "_status": "success",
  "_upstream": "https://github.com/cran/PRANA",
  "_commit": {
    "id": "3ebe5d0257df9b8cc76532457f383b3e1c25e835",
    "author": "Seungjun Ahn <seungjun.ahn@mountsinai.org>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.6\n",
    "time": 1727060380
  },
  "_maintainer": {
    "name": "Seungjun Ahn",
    "email": "seungjun.ahn@mountsinai.org",
    "orcid": "0000-0002-4816-8924"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "robustbase",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "minet",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 630,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 302,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PRANA"
  },
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/PRANA.html"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.3",
      "date": "2023-03-29"
    },
    {
      "version": "1.0.4",
      "date": "2023-09-17"
    },
    {
      "version": "1.0.5",
      "date": "2024-07-27"
    },
    {
      "version": "1.0.6",
      "date": "2024-09-22"
    }
  ],
  "_exports": [
    "adjpval",
    "adjpval_specific_var",
    "coeff",
    "coeff_specific_var",
    "EBS",
    "PRANA",
    "run_aracne",
    "sigDCGnames",
    "sigDCGtab",
    "thetahats"
  ],
  "_datasets": [
    {
      "name": "combinedCOPDdat_RGO",
      "title": "Chronic Obstructive Pulmonary Disease (COPD) data",
      "object": "combinedCOPDdat_RGO",
      "class": [
        "data.frame"
      ],
      "fields": [
        "GEO_id",
        "currentsmoking",
        "packyrs",
        "age",
        "gender",
        "race",
        "FEV1perc",
        "10370",
        "10420",
        "1306",
        "155185",
        "158158",
        "1653",
        "1762",
        "23389",
        "253461",
        "26112",
        "27436",
        "3308",
        "3696",
        "374739",
        "3842",
        "406",
        "56986",
        "57188",
        "6239",
        "7067",
        "7871",
        "79961",
        "79991",
        "8224",
        "8853",
        "8870",
        "9258",
        "9686"
      ],
      "rows": 406,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "adjpval",
      "title": "adjpval",
      "topics": [
        "adjpval"
      ]
    },
    {
      "page": "adjpval_specific_var",
      "title": "adjpval_specific_var",
      "topics": [
        "adjpval_specific_var"
      ]
    },
    {
      "page": "coeff",
      "title": "coeff",
      "topics": [
        "coeff"
      ]
    },
    {
      "page": "coeff_specific_var",
      "title": "coeff_specific_var",
      "topics": [
        "coeff_specific_var"
      ]
    },
    {
      "page": "combinedCOPDdat_RGO",
      "title": "Chronic Obstructive Pulmonary Disease (COPD) data",
      "topics": [
        "combinedCOPDdat_RGO"
      ]
    },
    {
      "page": "EBS",
      "title": "EBS",
      "topics": [
        "EBS"
      ]
    },
    {
      "page": "PRANA",
      "title": "PRANA",
      "topics": [
        "PRANA"
      ]
    },
    {
      "page": "run_aracne",
      "title": "run_aracne",
      "topics": [
        "run_aracne"
      ]
    },
    {
      "page": "sigDCGnames",
      "title": "sigDCGnames",
      "topics": [
        "sigDCGnames"
      ]
    },
    {
      "page": "sigDCGtab",
      "title": "sigDCGtab",
      "topics": [
        "sigDCGtab"
      ]
    },
    {
      "page": "thetahats",
      "title": "thetahats",
      "topics": [
        "thetahats"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "DEoptimR",
    "dplyr",
    "generics",
    "glue",
    "infotheo",
    "lifecycle",
    "magrittr",
    "minet",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "robustbase",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "UserManualPRANA.Rmd",
      "filename": "UserManualPRANA.html",
      "title": "A User Manual for PRANA",
      "author": "Seungjun Ahn",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Requirements",
        "Example: Load the COPDGene study data from PRANA R package:",
        "Data processing for the example data from COPDGene study:",
        "Apply the PRANA:",
        "Some supporting features after the use of PRANA:",
        "References"
      ],
      "created": "2023-03-29 07:00:09",
      "modified": "2024-07-28 02:47:15",
      "commits": 3
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "prana",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.6",
      "date": "2026-10-03T10:19:56.000Z",
      "distro": "resolute",
      "commit": "3ebe5d0257df9b8cc76532457f383b3e1c25e835",
      "fileid": "https://r2.ropensci.org/4df8485271d5e39012b418cede6363a6a8d7e552a766a993ccd40698a39c02fe",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37115721031"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.6",
      "date": "2026-10-03T10:19:32.000Z",
      "distro": "resolute",
      "commit": "3ebe5d0257df9b8cc76532457f383b3e1c25e835",
      "fileid": "https://r2.ropensci.org/2a532ae261de6b77b0068866c138d865d696730a18f577ec0708d290d57ede24",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37115721031"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.6",
      "date": "2026-10-03T10:19:23.000Z",
      "commit": "3ebe5d0257df9b8cc76532457f383b3e1c25e835",
      "fileid": "https://r2.ropensci.org/29323d9a94b126ab437de4fb2b72a1072b5b802ef1c08985810eb0b3ba5a6453",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37115721031"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.6",
      "date": "2026-10-03T10:18:47.000Z",
      "commit": "3ebe5d0257df9b8cc76532457f383b3e1c25e835",
      "fileid": "https://r2.ropensci.org/36acd73e0cc9f4641952b9fd26f0459ab65299a9f04af358f1d8cb07730e6fe0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37115721031"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.6",
      "date": "2026-10-03T10:18:38.000Z",
      "commit": "3ebe5d0257df9b8cc76532457f383b3e1c25e835",
      "fileid": "https://r2.ropensci.org/5745037ebe72051a6af0eca9ef4ad70c02d4d8f3164260a804a2d7e2e8aa7e29",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/37115721031"
    }
  ]
}