Package: PMCMRplus 1.9.12
Thorsten Pohlert
PMCMRplus: Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended
For one-way layout experiments the one-way ANOVA can be performed as an omnibus test. All-pairs multiple comparisons tests (Tukey-Kramer test, Scheffe test, LSD-test) and many-to-one tests (Dunnett test) for normally distributed residuals and equal within variance are available. Furthermore, all-pairs tests (Games-Howell test, Tamhane's T2 test, Dunnett T3 test, Ury-Wiggins-Hochberg test) and many-to-one (Tamhane-Dunnett Test) for normally distributed residuals and heterogeneous variances are provided. Van der Waerden's normal scores test for omnibus, all-pairs and many-to-one tests is provided for non-normally distributed residuals and homogeneous variances. The Kruskal-Wallis, BWS and Anderson-Darling omnibus test and all-pairs tests (Nemenyi test, Dunn test, Conover test, Dwass-Steele-Critchlow- Fligner test) as well as many-to-one (Nemenyi test, Dunn test, U-test) are given for the analysis of variance by ranks. Non-parametric trend tests (Jonckheere test, Cuzick test, Johnson-Mehrotra test, Spearman test) are included. In addition, a Friedman-test for one-way ANOVA with repeated measures on ranks (CRBD) and Skillings-Mack test for unbalanced CRBD is provided with consequent all-pairs tests (Nemenyi test, Siegel test, Miller test, Conover test, Exact test) and many-to-one tests (Nemenyi test, Demsar test, Exact test). A trend can be tested with Pages's test. Durbin's test for a two-way balanced incomplete block design (BIBD) is given in this package as well as Gore's test for CRBD with multiple observations per cell is given. Outlier tests, Mandel's k- and h statistic as well as functions for Type I error and Power analysis as well as generic summary, print and plot methods are provided.
Authors:
PMCMRplus_1.9.12.tar.gz
PMCMRplus_1.9.12.tar.gz(r-4.5-noble)PMCMRplus_1.9.12.tar.gz(r-4.4-noble)
PMCMRplus_1.9.12.tgz(r-4.4-emscripten)PMCMRplus_1.9.12.tgz(r-4.3-emscripten)
PMCMRplus.pdf |PMCMRplus.html✨
PMCMRplus/json (API)
NEWS
# Install 'PMCMRplus' in R: |
install.packages('PMCMRplus', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:da70f47048. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 09 2024 |
R-4.5-linux-x86_64 | OK | Oct 09 2024 |
Exports:adAllPairsTestadKSampleTestadManyOneTestbarPlotbwsAllPairsTestbwsKSampleTestbwsManyOneTestbwsTrendTestchaAllPairsNashimotoTestchackoTestchenJanTestchenTestcochranTestcuzickTestdoubleGrubbsTestdscfAllPairsTestduncanTestdunnettT3TestdunnettTestdurbinAllPairsTestdurbinTestflignerWolfeTestfrdAllPairsConoverTestfrdAllPairsExactTestfrdAllPairsMillerTestfrdAllPairsNemenyiTestfrdAllPairsSiegelTestfrdHouseTestfrdManyOneDemsarTestfrdManyOneExactTestfrdManyOneNemenyiTestfriedmanTestgamesHowellTestgesdTestgoreTestgrubbsTestGSTTesthartleyTesthayterStoneTesthsAllPairsTestjohnsonTestjonckheereTestkruskalTestkwAllPairsConoverTestkwAllPairsDunnTestkwAllPairsNemenyiTestkwManyOneConoverTestkwManyOneDunnTestkwManyOneNdwTestleTestlsdTestmackWolfeTestmandelhTestmandelkTestmanyOneUTestmedianAllPairsTestmedianTestmrrTestMTestnormalScoresAllPairsTestnormalScoresManyOneTestnormalScoresTestNPMTestosrtTestpageTestpcochranpdgrubbspDunnettpgrubbspmandelhpmandelkpower.dunnett.testpower.tukey.testpower.williams.testpowerMCTestspowerOneWayTestsqcochranqDunnettqgrubbsqmandelhqmandelkquadeAllPairsTestscheffeTestshanTestshirleyWilliamsTestsiegelTukeyTestskillingsMackTestsnkTestspearmanTeststeelsKSampleTeststeelTeststepDownTrendTestsummaryGrouptamhaneDunnettTesttamhaneT2TesttoTidytukeyTesturyWigginsHochbergTestvanWaerdenAllPairsTestvanWaerdenManyOneTestvanWaerdenTestwelchManyOneTTestwilliamsTest
Dependencies:BWStestcachemfastmapgmpkSamplesMASSmemoisemultcompViewmvtnormRcpprlangRmpfrSuppDists
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Anderson-Darling All-Pairs Comparison Test | adAllPairsTest adAllPairsTest.default adAllPairsTest.formula |
Anderson-Darling k-Sample Test | adKSampleTest adKSampleTest.default adKSampleTest.formula |
Anderson-Darling Many-To-One Comparison Test | adManyOneTest adManyOneTest.default adManyOneTest.formula |
Algae Growth Inhibition Data Set | algae |
Plotting PMCMR Objects | barPlot |
BWS All-Pairs Comparison Test | bwsAllPairsTest bwsAllPairsTest.default bwsAllPairsTest.formula |
Murakami's k-Sample BWS Test | bwsKSampleTest bwsKSampleTest.default bwsKSampleTest.formula |
BWS Many-To-One Comparison Test | bwsManyOneTest bwsManyOneTest.default bwsManyOneTest.formula |
Testing against Ordered Alternatives (Murakami's BWS Trend Test) | bwsTrendTest bwsTrendTest.default bwsTrendTest.formula |
All-Pairs Comparisons for Simply Ordered Mean Ranksums | chaAllPairsNashimotoTest chaAllPairsNashimotoTest.default chaAllPairsNashimotoTest.formula |
Testing against Ordered Alternatives (Chacko's Test) | chackoTest chackoTest.default chackoTest.formula |
Chen and Jan Many-to-One Comparisons Test | chenJanTest chenJanTest.default |
Chen's Many-to-One Comparisons Test | chenTest chenTest.default chenTest.formula |
Cochran's distribution | Cochran pcochran qcochran |
Cochran Test | cochranTest cochranTest.default cochranTest.formula |
Testing against Ordered Alternatives (Cuzick's Test) | cuzickTest cuzickTest.default cuzickTest.formula |
Grubbs D* distribution | Dgrubbs pdgrubbs |
Grubbs Double Outlier Test | doubleGrubbsTest |
Multiple Comparisons of Mean Rank Sums | dscfAllPairsTest dscfAllPairsTest.default dscfAllPairsTest.formula |
Duncan's Multiple Range Test | duncanTest duncanTest.aov duncanTest.default duncanTest.formula |
Dunnett's T3 Test | dunnettT3Test dunnettT3Test.aov dunnettT3Test.default dunnettT3Test.formula |
Dunnett's Many-to-One Comparisons Test | dunnettTest dunnettTest.aov dunnettTest.default dunnettTest.formula |
All-Pairs Comparisons Test for Balanced Incomplete Block Designs | durbinAllPairsTest durbinAllPairsTest.default |
Durbin Test | durbinTest durbinTest.default |
Testing Several Treatments With One Control | flignerWolfeTest flignerWolfeTest.default flignerWolfeTest.formula |
Conover's All-Pairs Comparisons Test for Unreplicated Blocked Data | frdAllPairsConoverTest frdAllPairsConoverTest.default |
Exact All-Pairs Comparisons Test for Unreplicated Blocked Data | frdAllPairsExactTest frdAllPairsExactTest.default |
Millers's All-Pairs Comparisons Test for Unreplicated Blocked Data | frdAllPairsMillerTest frdAllPairsMillerTest.default |
Nemenyi's All-Pairs Comparisons Test for Unreplicated Blocked Data | frdAllPairsNemenyiTest frdAllPairsNemenyiTest.default frdAllPairsNemenyiTest.formula |
Siegel and Castellan's All-Pairs Comparisons Test for Unreplicated Blocked Data | frdAllPairsSiegelTest frdAllPairsSiegelTest.default |
House Test | frdHouseTest frdHouseTest.default |
Demsar's Many-to-One Test for Unreplicated Blocked Data | frdManyOneDemsarTest frdManyOneDemsarTest.default |
Exact Many-to-One Test for Unreplicated Blocked Data | frdManyOneExactTest frdManyOneExactTest.default |
Nemenyi's Many-to-One Test for Unreplicated Blocked Data | frdManyOneNemenyiTest frdManyOneNemenyiTest.default |
Friedman Rank Sum Test | friedmanTest friedmanTest.default |
Games-Howell Test | gamesHowellTest gamesHowellTest.aov gamesHowellTest.default gamesHowellTest.formula |
Generalized Extreme Studentized Deviate Many-Outlier Test | gesdTest |
Gore Test | goreTest |
Grubbs distribution | Grubbs pgrubbs qgrubbs |
Grubbs Outlier Test | grubbsTest |
Generalized Siegel-Tukey Test of Homogeneity of Scales | GSTTest GSTTest.default GSTTest.formula |
Hartley's Maximum F-Ratio Test of Homogeneity of Variances | hartleyTest hartleyTest.default hartleyTest.formula |
Hayter-Stone Test | hayterStoneTest hayterStoneTest.default hayterStoneTest.formula |
Hayter-Stone All-Pairs Comparison Test | hsAllPairsTest hsAllPairsTest.default hsAllPairsTest.formula |
Testing against Ordered Alternatives (Johnson-Mehrotra Test) | johnsonTest johnsonTest.default johnsonTest.formula |
Testing against Ordered Alternatives (Jonckheere-Terpstra Test) | jonckheereTest jonckheereTest.default jonckheereTest.formula |
Kruskal-Wallis Rank Sum Test | kruskalTest kruskalTest.default kruskalTest.formula |
Conover's All-Pairs Rank Comparison Test | kwAllPairsConoverTest kwAllPairsConoverTest.default kwAllPairsConoverTest.formula |
Dunn's All-Pairs Rank Comparison Test | default kwAllPairsDunnTest kwAllPairsDunnTest.default kwAllPairsDunnTest.formula |
Nemenyi's All-Pairs Rank Comparison Test | kwAllPairsNemenyiTest kwAllPairsNemenyiTest.default kwAllPairsNemenyiTest.formula |
Conover's Many-to-One Rank Comparison Test | kwManyOneConoverTest kwManyOneConoverTest.default kwManyOneConoverTest.formula |
Dunn's Many-to-One Rank Comparison Test | kwManyOneDunnTest kwManyOneDunnTest.default kwManyOneDunnTest.formula |
Nemenyi-Damico-Wolfe Many-to-One Rank Comparison Test | kwManyOneNdwTest kwManyOneNdwTest.default kwManyOneNdwTest.formula |
Testing against Ordered Alternatives (Le's Test) | leTest leTest.default leTest.formula |
Least Significant Difference Test | lsdTest lsdTest.aov lsdTest.default lsdTest.formula |
Mack-Wolfe Test for Umbrella Alternatives | mackWolfeTest mackWolfeTest.default mackWolfeTest.formula |
Mandel's h Distribution | Mandel-h pmandelh qmandelh |
Mandel's k Distribution | Mandel-k pmandelk qmandelk |
Mandel's h Test According to E 691 ASTM | mandelhTest mandelhTest.default mandelhTest.formula |
Mandel's k Test According to E 691 ASTM | mandelkTest mandelkTest.default mandelkTest.formula |
Multiple Comparisons with One Control (U-test) | manyOneUTest manyOneUTest.default manyOneUTest.formula |
Brown-Mood All Pairs Median Test | medianAllPairsTest medianAllPairsTest.default medianAllPairsTest.formula |
Brown-Mood Median Test | medianTest medianTest.default medianTest.formula |
Madhava Rao-Raghunath Test for Testing Treatment vs. Control | mrrTest mrrTest.default mrrTest.formula |
Extended One-Sided Studentised Range Test | MTest MTest.aov MTest.default MTest.formula |
Lu-Smith All-Pairs Comparison Normal Scores Test | normalScoresAllPairsTest normalScoresAllPairsTest.default normalScoresAllPairsTest.formula |
Lu-Smith Many-One Comparisons Normal Scores Test | normalScoresManyOneTest normalScoresManyOneTest.default normalScoresManyOneTest.formula |
Lu-Smith Normal Scores Test | normalScoresTest normalScoresTest.default normalScoresTest.formula |
All-Pairs Comparisons for Simply Ordered Mean Ranksums | NPMTest NPMTest.default NPMTest.formula |
One-Sided Studentized Range Test | osrtTest osrtTest.aov osrtTest.default osrtTest.formula |
Page Rank Sum Test | pageTest pageTest.default |
Pentosan Dataset | Pentosan |
Plotting mandel Objects | plot.mandel |
Plotting PMCMR Objects | plot.PMCMR |
Power Calculations for Balanced Dunnett's Many-to-One Comparison Test | power.dunnett.test |
Power Calculations for Balanced Tukey's Multiple Comparison Test | power.tukey.test |
Power calculations for minimum detectable difference of the Williams' test | power.williams.test |
Power Simulation for One-Factorial All-Pairs and Many-To-One Comparison Tests | powerMCTests |
Power Simulation for One-Factorial Single Hypothesis Tests | powerOneWayTests |
gesdTest Printing | print.gesdTest |
Mandel Printing | print print.mandel |
osrt Printing | print.osrt |
PMCMR Printing | print.PMCMR |
PowerOneWayPMCMR Printing | print.powerOneWayPMCMR |
PowerPMCMR Printing | print.powerPMCMR |
trendPMCMR Printing | print.trendPMCMR |
Dunnett Distribution | Dunnett pDunnett qDunnett |
qPCR Curve Analysis Methods | qPCR |
All-Pairs Comparisons for Unreplicated Blocked Data (Quade's All-Pairs Test) | quadeAllPairsTest quadeAllPairsTest.default |
Reviewers | reviewers |
Scheffe's Test | scheffeTest scheffeTest.aov scheffeTest.default scheffeTest.formula |
Testing against Ordered Alternatives (Shan-Young-Kang Test) | shanTest shanTest.default shanTest.formula |
Shirley-Williams Test | shirleyWilliamsTest shirleyWilliamsTest.default shirleyWilliamsTest.formula |
Siegel-Tukey Rank Dispersion Test | siegelTukeyTest siegelTukeyTest.default siegelTukeyTest.formula |
Skillings-Mack Test | skillingsMackTest skillingsMackTest.default |
Student-Newman-Keuls Test | snkTest snkTest.aov snkTest.default snkTest.formula |
Testing against Ordered Alternatives (Spearman Test) | spearmanTest spearmanTest.default spearmanTest.formula |
Steel's k-Treatments vs. Control Test | steelsKSampleTest steelsKSampleTest.default steelsKSampleTest.formula |
Steel's Many-to-One Rank Test | steelTest steelTest.default steelTest.formula |
Step Down Trend Tests | stepDownTrendTest stepDownTrendTest.default stepDownTrendTest.formula |
Summarize an gesdTest Object | summary.gesdTest |
Object Summary for class '"mandel"' | summary.mandel |
Summarize an osrt Object | summary.osrt |
Summarize an PMCMR Object | summary.PMCMR |
Summarize an trendPMCMR Object | summary.trendPMCMR |
Grouped Summary of an PMCMR Object | summaryGroup |
Tamhane-Dunnett Many-to-One Comparison Test | tamhaneDunnettTest tamhaneDunnettTest.aov tamhaneDunnettTest.default tamhaneDunnettTest.formula |
Tamhane's T2 Test | tamhaneT2Test tamhaneT2Test.aov tamhaneT2Test.default tamhaneT2Test.formula |
Convert a PMCMR or osrt Object to a Data.Frame | toTidy |
Data from a Dose-Response Experiment with Trouts | trout |
Tukey's Multiple Comparison Test | tukeyTest tukeyTest.aov tukeyTest.default tukeyTest.formula |
Ury, Wiggins, Hochberg Test | uryWigginsHochbergTest uryWigginsHochbergTest.aov uryWigginsHochbergTest.default uryWigginsHochbergTest.formula |
van-der-Waerden's All-Pairs Comparison Normal Scores Test | vanWaerdenAllPairsTest vanWaerdenAllPairsTest.default vanWaerdenAllPairsTest.formula |
van-der-Waerden's Many-One Comparisons Normal Scores Test | vanWaerdenManyOneTest vanWaerdenManyOneTest.default vanWaerdenManyOneTest.formula |
van der Waerden's Normal Scores Test | vanWaerdenTest vanWaerdenTest.default vanWaerdenTest.formula vanWeardenTest.default |
Welchs's Many-To-One Comparison Test | welchManyOneTTest welchManyOneTTest.aov welchManyOneTTest.default welchManyOneTTest.formula |
Williams Trend Test | williamsTest williamsTest.aov williamsTest.default williamsTest.formula |