Package: PMCMRplus 1.9.12

Thorsten Pohlert
PMCMRplus: Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended
For one-way layout experiments the one-way ANOVA can be performed as an omnibus test. All-pairs multiple comparisons tests (Tukey-Kramer test, Scheffe test, LSD-test) and many-to-one tests (Dunnett test) for normally distributed residuals and equal within variance are available. Furthermore, all-pairs tests (Games-Howell test, Tamhane's T2 test, Dunnett T3 test, Ury-Wiggins-Hochberg test) and many-to-one (Tamhane-Dunnett Test) for normally distributed residuals and heterogeneous variances are provided. Van der Waerden's normal scores test for omnibus, all-pairs and many-to-one tests is provided for non-normally distributed residuals and homogeneous variances. The Kruskal-Wallis, BWS and Anderson-Darling omnibus test and all-pairs tests (Nemenyi test, Dunn test, Conover test, Dwass-Steele-Critchlow- Fligner test) as well as many-to-one (Nemenyi test, Dunn test, U-test) are given for the analysis of variance by ranks. Non-parametric trend tests (Jonckheere test, Cuzick test, Johnson-Mehrotra test, Spearman test) are included. In addition, a Friedman-test for one-way ANOVA with repeated measures on ranks (CRBD) and Skillings-Mack test for unbalanced CRBD is provided with consequent all-pairs tests (Nemenyi test, Siegel test, Miller test, Conover test, Exact test) and many-to-one tests (Nemenyi test, Demsar test, Exact test). A trend can be tested with Pages's test. Durbin's test for a two-way balanced incomplete block design (BIBD) is given in this package as well as Gore's test for CRBD with multiple observations per cell is given. Outlier tests, Mandel's k- and h statistic as well as functions for Type I error and Power analysis as well as generic summary, print and plot methods are provided.
Authors:
PMCMRplus_1.9.12.tar.gz
PMCMRplus_1.9.12.tar.gz(r-4.7-arm64)PMCMRplus_1.9.12.tar.gz(r-4.7-x86_64)PMCMRplus_1.9.12.tar.gz(r-4.6-arm64)PMCMRplus_1.9.12.tar.gz(r-4.6-x86_64)
PMCMRplus_1.9.12.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PMCMRplus/json (API)
| # Install 'PMCMRplus' in R: |
| install.packages('PMCMRplus', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:da70f47048. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 555 | ||
| linux-devel-x86_64 | OK | 568 | ||
| source / vignettes | OK | 634 | ||
| linux-release-arm64 | OK | 564 | ||
| linux-release-x86_64 | OK | 639 | ||
| wasm-release | OK | 878 |
Exports:adAllPairsTestadKSampleTestadManyOneTestbarPlotbwsAllPairsTestbwsKSampleTestbwsManyOneTestbwsTrendTestchaAllPairsNashimotoTestchackoTestchenJanTestchenTestcochranTestcuzickTestdoubleGrubbsTestdscfAllPairsTestduncanTestdunnettT3TestdunnettTestdurbinAllPairsTestdurbinTestflignerWolfeTestfrdAllPairsConoverTestfrdAllPairsExactTestfrdAllPairsMillerTestfrdAllPairsNemenyiTestfrdAllPairsSiegelTestfrdHouseTestfrdManyOneDemsarTestfrdManyOneExactTestfrdManyOneNemenyiTestfriedmanTestgamesHowellTestgesdTestgoreTestgrubbsTestGSTTesthartleyTesthayterStoneTesthsAllPairsTestjohnsonTestjonckheereTestkruskalTestkwAllPairsConoverTestkwAllPairsDunnTestkwAllPairsNemenyiTestkwManyOneConoverTestkwManyOneDunnTestkwManyOneNdwTestleTestlsdTestmackWolfeTestmandelhTestmandelkTestmanyOneUTestmedianAllPairsTestmedianTestmrrTestMTestnormalScoresAllPairsTestnormalScoresManyOneTestnormalScoresTestNPMTestosrtTestpageTestpcochranpdgrubbspDunnettpgrubbspmandelhpmandelkpower.dunnett.testpower.tukey.testpower.williams.testpowerMCTestspowerOneWayTestsqcochranqDunnettqgrubbsqmandelhqmandelkquadeAllPairsTestscheffeTestshanTestshirleyWilliamsTestsiegelTukeyTestskillingsMackTestsnkTestspearmanTeststeelsKSampleTeststeelTeststepDownTrendTestsummaryGrouptamhaneDunnettTesttamhaneT2TesttoTidytukeyTesturyWigginsHochbergTestvanWaerdenAllPairsTestvanWaerdenManyOneTestvanWaerdenTestwelchManyOneTTestwilliamsTest
Dependencies:BWStestcachemfastmapgmpkSamplesMASSmemoisemultcompViewmvtnormRcpprlangRmpfrSuppDists
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Anderson-Darling All-Pairs Comparison Test | adAllPairsTest adAllPairsTest.default adAllPairsTest.formula |
| Anderson-Darling k-Sample Test | adKSampleTest adKSampleTest.default adKSampleTest.formula |
| Anderson-Darling Many-To-One Comparison Test | adManyOneTest adManyOneTest.default adManyOneTest.formula |
| Algae Growth Inhibition Data Set | algae |
| Plotting PMCMR Objects | barPlot |
| BWS All-Pairs Comparison Test | bwsAllPairsTest bwsAllPairsTest.default bwsAllPairsTest.formula |
| Murakami's k-Sample BWS Test | bwsKSampleTest bwsKSampleTest.default bwsKSampleTest.formula |
| BWS Many-To-One Comparison Test | bwsManyOneTest bwsManyOneTest.default bwsManyOneTest.formula |
| Testing against Ordered Alternatives (Murakami's BWS Trend Test) | bwsTrendTest bwsTrendTest.default bwsTrendTest.formula |
| All-Pairs Comparisons for Simply Ordered Mean Ranksums | chaAllPairsNashimotoTest chaAllPairsNashimotoTest.default chaAllPairsNashimotoTest.formula |
| Testing against Ordered Alternatives (Chacko's Test) | chackoTest chackoTest.default chackoTest.formula |
| Chen and Jan Many-to-One Comparisons Test | chenJanTest chenJanTest.default |
| Chen's Many-to-One Comparisons Test | chenTest chenTest.default chenTest.formula |
| Cochran's distribution | Cochran pcochran qcochran |
| Cochran Test | cochranTest cochranTest.default cochranTest.formula |
| Testing against Ordered Alternatives (Cuzick's Test) | cuzickTest cuzickTest.default cuzickTest.formula |
| Grubbs D* distribution | Dgrubbs pdgrubbs |
| Grubbs Double Outlier Test | doubleGrubbsTest |
| Multiple Comparisons of Mean Rank Sums | dscfAllPairsTest dscfAllPairsTest.default dscfAllPairsTest.formula |
| Duncan's Multiple Range Test | duncanTest duncanTest.aov duncanTest.default duncanTest.formula |
| Dunnett's T3 Test | dunnettT3Test dunnettT3Test.aov dunnettT3Test.default dunnettT3Test.formula |
| Dunnett's Many-to-One Comparisons Test | dunnettTest dunnettTest.aov dunnettTest.default dunnettTest.formula |
| All-Pairs Comparisons Test for Balanced Incomplete Block Designs | durbinAllPairsTest durbinAllPairsTest.default |
| Durbin Test | durbinTest durbinTest.default |
| Testing Several Treatments With One Control | flignerWolfeTest flignerWolfeTest.default flignerWolfeTest.formula |
| Conover's All-Pairs Comparisons Test for Unreplicated Blocked Data | frdAllPairsConoverTest frdAllPairsConoverTest.default |
| Exact All-Pairs Comparisons Test for Unreplicated Blocked Data | frdAllPairsExactTest frdAllPairsExactTest.default |
| Millers's All-Pairs Comparisons Test for Unreplicated Blocked Data | frdAllPairsMillerTest frdAllPairsMillerTest.default |
| Nemenyi's All-Pairs Comparisons Test for Unreplicated Blocked Data | frdAllPairsNemenyiTest frdAllPairsNemenyiTest.default frdAllPairsNemenyiTest.formula |
| Siegel and Castellan's All-Pairs Comparisons Test for Unreplicated Blocked Data | frdAllPairsSiegelTest frdAllPairsSiegelTest.default |
| House Test | frdHouseTest frdHouseTest.default |
| Demsar's Many-to-One Test for Unreplicated Blocked Data | frdManyOneDemsarTest frdManyOneDemsarTest.default |
| Exact Many-to-One Test for Unreplicated Blocked Data | frdManyOneExactTest frdManyOneExactTest.default |
| Nemenyi's Many-to-One Test for Unreplicated Blocked Data | frdManyOneNemenyiTest frdManyOneNemenyiTest.default |
| Friedman Rank Sum Test | friedmanTest friedmanTest.default |
| Games-Howell Test | gamesHowellTest gamesHowellTest.aov gamesHowellTest.default gamesHowellTest.formula |
| Generalized Extreme Studentized Deviate Many-Outlier Test | gesdTest |
| Gore Test | goreTest |
| Grubbs distribution | Grubbs pgrubbs qgrubbs |
| Grubbs Outlier Test | grubbsTest |
| Generalized Siegel-Tukey Test of Homogeneity of Scales | GSTTest GSTTest.default GSTTest.formula |
| Hartley's Maximum F-Ratio Test of Homogeneity of Variances | hartleyTest hartleyTest.default hartleyTest.formula |
| Hayter-Stone Test | hayterStoneTest hayterStoneTest.default hayterStoneTest.formula |
| Hayter-Stone All-Pairs Comparison Test | hsAllPairsTest hsAllPairsTest.default hsAllPairsTest.formula |
| Testing against Ordered Alternatives (Johnson-Mehrotra Test) | johnsonTest johnsonTest.default johnsonTest.formula |
| Testing against Ordered Alternatives (Jonckheere-Terpstra Test) | jonckheereTest jonckheereTest.default jonckheereTest.formula |
| Kruskal-Wallis Rank Sum Test | kruskalTest kruskalTest.default kruskalTest.formula |
| Conover's All-Pairs Rank Comparison Test | kwAllPairsConoverTest kwAllPairsConoverTest.default kwAllPairsConoverTest.formula |
| Dunn's All-Pairs Rank Comparison Test | default kwAllPairsDunnTest kwAllPairsDunnTest.default kwAllPairsDunnTest.formula |
| Nemenyi's All-Pairs Rank Comparison Test | kwAllPairsNemenyiTest kwAllPairsNemenyiTest.default kwAllPairsNemenyiTest.formula |
| Conover's Many-to-One Rank Comparison Test | kwManyOneConoverTest kwManyOneConoverTest.default kwManyOneConoverTest.formula |
| Dunn's Many-to-One Rank Comparison Test | kwManyOneDunnTest kwManyOneDunnTest.default kwManyOneDunnTest.formula |
| Nemenyi-Damico-Wolfe Many-to-One Rank Comparison Test | kwManyOneNdwTest kwManyOneNdwTest.default kwManyOneNdwTest.formula |
| Testing against Ordered Alternatives (Le's Test) | leTest leTest.default leTest.formula |
| Least Significant Difference Test | lsdTest lsdTest.aov lsdTest.default lsdTest.formula |
| Mack-Wolfe Test for Umbrella Alternatives | mackWolfeTest mackWolfeTest.default mackWolfeTest.formula |
| Mandel's h Distribution | Mandel-h pmandelh qmandelh |
| Mandel's k Distribution | Mandel-k pmandelk qmandelk |
| Mandel's h Test According to E 691 ASTM | mandelhTest mandelhTest.default mandelhTest.formula |
| Mandel's k Test According to E 691 ASTM | mandelkTest mandelkTest.default mandelkTest.formula |
| Multiple Comparisons with One Control (U-test) | manyOneUTest manyOneUTest.default manyOneUTest.formula |
| Brown-Mood All Pairs Median Test | medianAllPairsTest medianAllPairsTest.default medianAllPairsTest.formula |
| Brown-Mood Median Test | medianTest medianTest.default medianTest.formula |
| Madhava Rao-Raghunath Test for Testing Treatment vs. Control | mrrTest mrrTest.default mrrTest.formula |
| Extended One-Sided Studentised Range Test | MTest MTest.aov MTest.default MTest.formula |
| Lu-Smith All-Pairs Comparison Normal Scores Test | normalScoresAllPairsTest normalScoresAllPairsTest.default normalScoresAllPairsTest.formula |
| Lu-Smith Many-One Comparisons Normal Scores Test | normalScoresManyOneTest normalScoresManyOneTest.default normalScoresManyOneTest.formula |
| Lu-Smith Normal Scores Test | normalScoresTest normalScoresTest.default normalScoresTest.formula |
| All-Pairs Comparisons for Simply Ordered Mean Ranksums | NPMTest NPMTest.default NPMTest.formula |
| One-Sided Studentized Range Test | osrtTest osrtTest.aov osrtTest.default osrtTest.formula |
| Page Rank Sum Test | pageTest pageTest.default |
| Pentosan Dataset | Pentosan |
| Plotting mandel Objects | plot.mandel |
| Plotting PMCMR Objects | plot.PMCMR |
| Power Calculations for Balanced Dunnett's Many-to-One Comparison Test | power.dunnett.test |
| Power Calculations for Balanced Tukey's Multiple Comparison Test | power.tukey.test |
| Power calculations for minimum detectable difference of the Williams' test | power.williams.test |
| Power Simulation for One-Factorial All-Pairs and Many-To-One Comparison Tests | powerMCTests |
| Power Simulation for One-Factorial Single Hypothesis Tests | powerOneWayTests |
| gesdTest Printing | print.gesdTest |
| Mandel Printing | print print.mandel |
| osrt Printing | print.osrt |
| PMCMR Printing | print.PMCMR |
| PowerOneWayPMCMR Printing | print.powerOneWayPMCMR |
| PowerPMCMR Printing | print.powerPMCMR |
| trendPMCMR Printing | print.trendPMCMR |
| Dunnett Distribution | Dunnett pDunnett qDunnett |
| qPCR Curve Analysis Methods | qPCR |
| All-Pairs Comparisons for Unreplicated Blocked Data (Quade's All-Pairs Test) | quadeAllPairsTest quadeAllPairsTest.default |
| Reviewers | reviewers |
| Scheffe's Test | scheffeTest scheffeTest.aov scheffeTest.default scheffeTest.formula |
| Testing against Ordered Alternatives (Shan-Young-Kang Test) | shanTest shanTest.default shanTest.formula |
| Shirley-Williams Test | shirleyWilliamsTest shirleyWilliamsTest.default shirleyWilliamsTest.formula |
| Siegel-Tukey Rank Dispersion Test | siegelTukeyTest siegelTukeyTest.default siegelTukeyTest.formula |
| Skillings-Mack Test | skillingsMackTest skillingsMackTest.default |
| Student-Newman-Keuls Test | snkTest snkTest.aov snkTest.default snkTest.formula |
| Testing against Ordered Alternatives (Spearman Test) | spearmanTest spearmanTest.default spearmanTest.formula |
| Steel's k-Treatments vs. Control Test | steelsKSampleTest steelsKSampleTest.default steelsKSampleTest.formula |
| Steel's Many-to-One Rank Test | steelTest steelTest.default steelTest.formula |
| Step Down Trend Tests | stepDownTrendTest stepDownTrendTest.default stepDownTrendTest.formula |
| Summarize an gesdTest Object | summary.gesdTest |
| Object Summary for class '"mandel"' | summary.mandel |
| Summarize an osrt Object | summary.osrt |
| Summarize an PMCMR Object | summary.PMCMR |
| Summarize an trendPMCMR Object | summary.trendPMCMR |
| Grouped Summary of an PMCMR Object | summaryGroup |
| Tamhane-Dunnett Many-to-One Comparison Test | tamhaneDunnettTest tamhaneDunnettTest.aov tamhaneDunnettTest.default tamhaneDunnettTest.formula |
| Tamhane's T2 Test | tamhaneT2Test tamhaneT2Test.aov tamhaneT2Test.default tamhaneT2Test.formula |
| Convert a PMCMR or osrt Object to a Data.Frame | toTidy |
| Data from a Dose-Response Experiment with Trouts | trout |
| Tukey's Multiple Comparison Test | tukeyTest tukeyTest.aov tukeyTest.default tukeyTest.formula |
| Ury, Wiggins, Hochberg Test | uryWigginsHochbergTest uryWigginsHochbergTest.aov uryWigginsHochbergTest.default uryWigginsHochbergTest.formula |
| van-der-Waerden's All-Pairs Comparison Normal Scores Test | vanWaerdenAllPairsTest vanWaerdenAllPairsTest.default vanWaerdenAllPairsTest.formula |
| van-der-Waerden's Many-One Comparisons Normal Scores Test | vanWaerdenManyOneTest vanWaerdenManyOneTest.default vanWaerdenManyOneTest.formula |
| van der Waerden's Normal Scores Test | vanWaerdenTest vanWaerdenTest.default vanWaerdenTest.formula vanWeardenTest.default |
| Welchs's Many-To-One Comparison Test | welchManyOneTTest welchManyOneTTest.aov welchManyOneTTest.default welchManyOneTTest.formula |
| Williams Trend Test | williamsTest williamsTest.aov williamsTest.default williamsTest.formula |