{ "_id": "6a1eb903b25058d4daadf21d", "Package": "PMCMRplus", "Type": "Package", "Title": "Calculate Pairwise Multiple Comparisons of Mean Rank Sums\nExtended", "Version": "1.9.12", "Date": "2024-09-07", "Authors@R": "person(given = \"Thorsten\", family = \"Pohlert\",\nemail = \"thorsten.pohlert@gmx.de\",\ncomment = c(ORCID = \"0000-0003-3855-3025\"),\nrole = c(\"aut\", \"cre\"))", "Description": "For one-way layout experiments the one-way ANOVA can be\nperformed as an omnibus test. All-pairs multiple comparisons\ntests (Tukey-Kramer test, Scheffe test, LSD-test) and\nmany-to-one tests (Dunnett test) for normally distributed\nresiduals and equal within variance are available. Furthermore,\nall-pairs tests (Games-Howell test, Tamhane's T2 test, Dunnett\nT3 test, Ury-Wiggins-Hochberg test) and many-to-one\n(Tamhane-Dunnett Test) for normally distributed residuals and\nheterogeneous variances are provided. Van der Waerden's normal\nscores test for omnibus, all-pairs and many-to-one tests is\nprovided for non-normally distributed residuals and homogeneous\nvariances. The Kruskal-Wallis, BWS and Anderson-Darling omnibus\ntest and all-pairs tests (Nemenyi test, Dunn test, Conover\ntest, Dwass-Steele-Critchlow- Fligner test) as well as\nmany-to-one (Nemenyi test, Dunn test, U-test) are given for the\nanalysis of variance by ranks. Non-parametric trend tests\n(Jonckheere test, Cuzick test, Johnson-Mehrotra test, Spearman\ntest) are included. In addition, a Friedman-test for one-way\nANOVA with repeated measures on ranks (CRBD) and Skillings-Mack\ntest for unbalanced CRBD is provided with consequent all-pairs\ntests (Nemenyi test, Siegel test, Miller test, Conover test,\nExact test) and many-to-one tests (Nemenyi test, Demsar test,\nExact test). A trend can be tested with Pages's test. Durbin's\ntest for a two-way balanced incomplete block design (BIBD) is\ngiven in this package as well as Gore's test for CRBD with\nmultiple observations per cell is given. Outlier tests,\nMandel's k- and h statistic as well as functions for Type I\nerror and Power analysis as well as generic summary, print and\nplot methods are provided.", "SystemRequirements": "gmp (>= 4.2.3), mpfr (>= 3.0.0) | file README.md", "SystemRequirementsNote": "see >> README.md", "SysDataCompression": "gzip", "VignetteBuilder": "knitr, rmarkdown", "Classification/MSC-2010": "62J15, 62J10, 62G10, 62F03, 62G30", "NeedsCompilation": "yes", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.1", "License": "GPL (>= 3)", "Packaged": { "Date": "2026-06-02 11:00:51 UTC", "User": "root" }, "Author": "Thorsten Pohlert [aut, cre]\n()", "Maintainer": "Thorsten Pohlert ", "Config/pak/sysreqs": "libgmp3-dev libmpfr-dev", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2024-09-09 02:56:26 UTC", "RemoteUrl": "https://github.com/cran/PMCMRplus", "RemoteRef": "HEAD", "RemoteSha": "da70f470480430c61696af1333f030f976d5a904", "MD5sum": 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[ "chaAllPairsNashimotoTest", "chaAllPairsNashimotoTest.default", "chaAllPairsNashimotoTest.formula" ] }, { "page": "chackoTest", "title": "Testing against Ordered Alternatives (Chacko's Test)", "concept": [ "trendtest" ], "topics": [ "chackoTest", "chackoTest.default", "chackoTest.formula" ] }, { "page": "chenJanTest", "title": "Chen and Jan Many-to-One Comparisons Test", "concept": [ "wilcoxonranks" ], "topics": [ "chenJanTest", "chenJanTest.default" ] }, { "page": "chenTest", "title": "Chen's Many-to-One Comparisons Test", "concept": [ "wilcoxonranks" ], "topics": [ "chenTest", "chenTest.default", "chenTest.formula" ] }, { "page": "Cochran", "title": "Cochran's distribution", "topics": [ "Cochran", "pcochran", "qcochran" ] }, { "page": "cochranTest", "title": "Cochran Test", "concept": [ "outliers" ], "topics": [ "cochranTest", "cochranTest.default", "cochranTest.formula" ] }, { "page": "cuzickTest", "title": "Testing against Ordered Alternatives (Cuzick's Test)", "concept": [ "trendtest", "wilcoxonranks" ], "topics": [ "cuzickTest", "cuzickTest.default", "cuzickTest.formula" ] }, { "page": "Dgrubbs", "title": "Grubbs D* distribution", "topics": [ "Dgrubbs", "pdgrubbs" ] }, { "page": "doubleGrubbsTest", "title": "Grubbs Double Outlier Test", "concept": [ "outliers" ], "topics": [ "doubleGrubbsTest" ] }, { "page": "dscfAllPairsTest", "title": "Multiple Comparisons of Mean Rank Sums", "concept": [ "wilcoxonranks" ], "topics": [ "dscfAllPairsTest", "dscfAllPairsTest.default", "dscfAllPairsTest.formula" ] }, { "page": "duncanTest", "title": "Duncan's Multiple Range Test", "concept": [ "parametric" ], "topics": [ "duncanTest", "duncanTest.aov", "duncanTest.default", "duncanTest.formula" ] }, { "page": "dunnettT3Test", "title": "Dunnett's T3 Test", "concept": [ "parametric" ], "topics": [ "dunnettT3Test", "dunnettT3Test.aov", "dunnettT3Test.default", "dunnettT3Test.formula" ] }, { "page": "dunnettTest", "title": "Dunnett's Many-to-One Comparisons Test", "concept": [ "parametric" ], "topics": [ "dunnettTest", "dunnettTest.aov", "dunnettTest.default", "dunnettTest.formula" ] }, { "page": "durbinAllPairsTest", "title": "All-Pairs Comparisons Test for Balanced Incomplete Block Designs", "concept": [ "friedmanranks" ], "topics": [ "durbinAllPairsTest", "durbinAllPairsTest.default" ] }, { "page": "durbinTest", "title": "Durbin Test", "concept": [ "friedmanranks" ], "topics": [ "durbinTest", "durbinTest.default" ] }, { "page": "flignerWolfeTest", "title": "Testing Several Treatments With One Control", "concept": [ "trendtest", "wilcoxonranks" ], "topics": [ "flignerWolfeTest", "flignerWolfeTest.default", "flignerWolfeTest.formula" ] }, { "page": "frdAllPairsConoverTest", "title": "Conover's All-Pairs Comparisons Test for Unreplicated Blocked Data", "concept": [ "friedmanranks" ], "topics": [ "frdAllPairsConoverTest", "frdAllPairsConoverTest.default" ] }, { "page": "frdAllPairsExactTest", "title": "Exact All-Pairs Comparisons Test for Unreplicated Blocked Data", "concept": [ "friedmanranks" ], "topics": [ "frdAllPairsExactTest", "frdAllPairsExactTest.default" ] }, { "page": "frdAllPairsMillerTest", "title": "Millers's All-Pairs Comparisons Test for Unreplicated Blocked Data", "concept": [ "friedmanranks" ], "topics": [ "frdAllPairsMillerTest", "frdAllPairsMillerTest.default" ] }, { "page": "frdAllPairsNemenyiTest", "title": "Nemenyi's All-Pairs Comparisons Test for Unreplicated Blocked Data", "concept": [ "friedmanranks" ], "topics": [ "frdAllPairsNemenyiTest", "frdAllPairsNemenyiTest.default", "frdAllPairsNemenyiTest.formula" ] }, { "page": "frdAllPairsSiegelTest", "title": "Siegel and Castellan's All-Pairs Comparisons Test for Unreplicated Blocked Data", "concept": [ "friedmanranks" ], "topics": [ "frdAllPairsSiegelTest", "frdAllPairsSiegelTest.default" ] }, { "page": "frdHouseTest", "title": "House Test", "concept": [ "friedmanranks" ], "topics": [ "frdHouseTest", "frdHouseTest.default" ] }, { "page": "frdManyOneDemsarTest", "title": "Demsar's Many-to-One Test for Unreplicated Blocked Data", "concept": [ "friedmanranks" ], "topics": [ "frdManyOneDemsarTest", "frdManyOneDemsarTest.default" ] }, { "page": "frdManyOneExactTest", "title": "Exact Many-to-One Test for Unreplicated Blocked Data", "concept": [ "friedmanranks" ], "topics": [ "frdManyOneExactTest", "frdManyOneExactTest.default" ] }, { "page": "frdManyOneNemenyiTest", "title": "Nemenyi's Many-to-One Test for Unreplicated Blocked Data", "concept": [ "friedmanranks" ], "topics": [ "frdManyOneNemenyiTest", "frdManyOneNemenyiTest.default" ] }, { "page": "friedmanTest", "title": "Friedman Rank Sum Test", "topics": [ "friedmanTest", "friedmanTest.default" ] }, { "page": "gamesHowellTest", "title": "Games-Howell Test", "concept": [ "parametric" ], "topics": [ "gamesHowellTest", "gamesHowellTest.aov", "gamesHowellTest.default", "gamesHowellTest.formula" ] }, { "page": "gesdTest", "title": "Generalized Extreme Studentized Deviate Many-Outlier Test", "concept": [ "outliers" ], "topics": [ "gesdTest" ] }, { "page": "goreTest", "title": "Gore Test", "topics": [ "goreTest" ] }, { "page": "Grubbs", "title": "Grubbs distribution", "topics": [ "Grubbs", "pgrubbs", "qgrubbs" ] }, { "page": "grubbsTest", "title": "Grubbs Outlier Test", "concept": [ "outliers" ], "topics": [ "grubbsTest" ] }, { "page": "GSTTest", "title": "Generalized Siegel-Tukey Test of Homogeneity of Scales", "topics": [ "GSTTest", "GSTTest.default", "GSTTest.formula" ] }, { "page": "hartleyTest", "title": "Hartley's Maximum F-Ratio Test of Homogeneity of Variances", "concept": [ "parametric" ], "topics": [ "hartleyTest", "hartleyTest.default", "hartleyTest.formula" ] }, { "page": "hayterStoneTest", "title": "Hayter-Stone Test", "topics": [ "hayterStoneTest", "hayterStoneTest.default", "hayterStoneTest.formula" ] }, { "page": "hsAllPairsTest", "title": "Hayter-Stone All-Pairs Comparison Test", "topics": [ "hsAllPairsTest", "hsAllPairsTest.default", "hsAllPairsTest.formula" ] }, { "page": "johnsonTest", "title": "Testing against Ordered Alternatives (Johnson-Mehrotra Test)", "concept": [ "trendtest" ], "topics": [ "johnsonTest", "johnsonTest.default", "johnsonTest.formula" ] }, { "page": "jonckheereTest", "title": "Testing against Ordered Alternatives (Jonckheere-Terpstra Test)", "concept": [ "trendtest" ], "topics": [ "jonckheereTest", "jonckheereTest.default", "jonckheereTest.formula" ] }, { "page": "kruskalTest", "title": "Kruskal-Wallis Rank Sum Test", "concept": [ "kruskalranks" ], "topics": [ "kruskalTest", "kruskalTest.default", "kruskalTest.formula" ] }, { "page": "kwAllPairsConoverTest", "title": "Conover's All-Pairs Rank Comparison Test", "concept": [ "kruskalranks" ], "topics": [ "kwAllPairsConoverTest", "kwAllPairsConoverTest.default", "kwAllPairsConoverTest.formula" ] }, { "page": "kwAllPairsDunnTest", "title": "Dunn's All-Pairs Rank Comparison Test", "concept": [ "kruskalranks" ], "topics": [ "default", "kwAllPairsDunnTest", "kwAllPairsDunnTest.default", "kwAllPairsDunnTest.formula" ] }, { "page": "kwAllPairsNemenyiTest", "title": "Nemenyi's All-Pairs Rank Comparison Test", "concept": [ "kruskalranks" ], "topics": [ "kwAllPairsNemenyiTest", "kwAllPairsNemenyiTest.default", "kwAllPairsNemenyiTest.formula" ] }, { "page": "kwManyOneConoverTest", "title": "Conover's Many-to-One Rank Comparison Test", "concept": [ "kruskalranks" ], "topics": [ "kwManyOneConoverTest", "kwManyOneConoverTest.default", "kwManyOneConoverTest.formula" ] }, { "page": "kwManyOneDunnTest", "title": "Dunn's Many-to-One Rank Comparison Test", "concept": [ "kruskalranks" ], "topics": [ "kwManyOneDunnTest", "kwManyOneDunnTest.default", "kwManyOneDunnTest.formula" ] }, { "page": "kwManyOneNdwTest", "title": "Nemenyi-Damico-Wolfe Many-to-One Rank Comparison Test", "concept": [ "kruskalranks" ], "topics": [ "kwManyOneNdwTest", "kwManyOneNdwTest.default", "kwManyOneNdwTest.formula" ] }, { "page": "leTest", "title": "Testing against Ordered Alternatives (Le's Test)", "concept": [ "trendtest" ], "topics": [ "leTest", "leTest.default", "leTest.formula" ] }, { "page": "lsdTest", "title": "Least Significant Difference Test", "concept": [ "parametric" ], "topics": [ "lsdTest", "lsdTest.aov", "lsdTest.default", "lsdTest.formula" ] }, { "page": "mackWolfeTest", "title": "Mack-Wolfe Test for Umbrella Alternatives", "concept": [ "kruskalranks", "umbrellatest" ], "topics": [ "mackWolfeTest", "mackWolfeTest.default", "mackWolfeTest.formula" ] }, { "page": "Mandel-h", "title": "Mandel's h Distribution", "topics": [ "Mandel-h", "pmandelh", "qmandelh" ] }, { "page": "Mandel-k", "title": "Mandel's k Distribution", "topics": [ "Mandel-k", "pmandelk", "qmandelk" ] }, { "page": "mandelhTest", "title": "Mandel's h Test According to E 691 ASTM", "topics": [ "mandelhTest", "mandelhTest.default", "mandelhTest.formula" ] }, { "page": "mandelkTest", "title": "Mandel's k Test According to E 691 ASTM", "topics": [ "mandelkTest", "mandelkTest.default", "mandelkTest.formula" ] }, { "page": "manyOneUTest", "title": "Multiple Comparisons with One Control (U-test)", "concept": [ "wilcoxonranks" ], "topics": [ "manyOneUTest", "manyOneUTest.default", "manyOneUTest.formula" ] }, { "page": "medianAllPairsTest", "title": "Brown-Mood All Pairs Median Test", "topics": [ "medianAllPairsTest", "medianAllPairsTest.default", "medianAllPairsTest.formula" ] }, { "page": "medianTest", "title": "Brown-Mood Median Test", "topics": [ "medianTest", "medianTest.default", "medianTest.formula" ] }, { "page": "mrrTest", "title": "Madhava Rao-Raghunath Test for Testing Treatment vs. Control", "topics": [ "mrrTest", "mrrTest.default", "mrrTest.formula" ] }, { "page": "MTest", "title": "Extended One-Sided Studentised Range Test", "concept": [ "parametric" ], "topics": [ "MTest", "MTest.aov", "MTest.default", "MTest.formula" ] }, { "page": "normalScoresAllPairsTest", "title": "Lu-Smith All-Pairs Comparison Normal Scores 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"page": "Pentosan", "title": "Pentosan Dataset", "topics": [ "Pentosan" ] }, { "page": "plot.mandel", "title": "Plotting mandel Objects", "topics": [ "plot.mandel" ] }, { "page": "plot.PMCMR", "title": "Plotting PMCMR Objects", "topics": [ "plot.PMCMR" ] }, { "page": "power.dunnett.test", "title": "Power Calculations for Balanced Dunnett's Many-to-One Comparison Test", "topics": [ "power.dunnett.test" ] }, { "page": "power.tukey.test", "title": "Power Calculations for Balanced Tukey's Multiple Comparison Test", "topics": [ "power.tukey.test" ] }, { "page": "power.williams.test", "title": "Power calculations for minimum detectable difference of the Williams' test", "topics": [ "power.williams.test" ] }, { "page": "powerMCTests", "title": "Power Simulation for One-Factorial All-Pairs and Many-To-One Comparison Tests", "concept": [ "testpower" ], "topics": [ "powerMCTests" ] }, { "page": "powerOneWayTests", "title": "Power Simulation for One-Factorial Single Hypothesis Tests", "concept": [ "testpower" ], "topics": [ "powerOneWayTests" ] }, { "page": "print.gesdTest", "title": "gesdTest Printing", "topics": [ "print.gesdTest" ] }, { "page": "print.mandel", "title": "Mandel Printing", "topics": [ "print", "print.mandel" ] }, { "page": "print.osrt", "title": "osrt Printing", "topics": [ "print.osrt" ] }, { "page": "print.PMCMR", "title": "PMCMR Printing", "topics": [ "print.PMCMR" ] }, { "page": "print.powerOneWayPMCMR", "title": "PowerOneWayPMCMR Printing", "topics": [ "print.powerOneWayPMCMR" ] }, { "page": "print.powerPMCMR", "title": "PowerPMCMR Printing", "topics": [ "print.powerPMCMR" ] }, { "page": "print.trendPMCMR", "title": "trendPMCMR Printing", "topics": [ "print.trendPMCMR" ] }, { "page": "Dunnett", "title": "Dunnett Distribution", "topics": [ "Dunnett", "pDunnett", "qDunnett" ] }, { "page": "qPCR", "title": "qPCR Curve Analysis Methods", "topics": [ "qPCR" ] }, { "page": "quadeAllPairsTest", "title": "All-Pairs Comparisons for Unreplicated Blocked Data 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"summary.gesdTest" ] }, { "page": "summary.mandel", "title": "Object Summary for class '\"mandel\"'", "topics": [ "summary.mandel" ] }, { "page": "summary.osrt", "title": "Summarize an osrt Object", "topics": [ "summary.osrt" ] }, { "page": "summary.PMCMR", "title": "Summarize an PMCMR Object", "topics": [ "summary.PMCMR" ] }, { "page": "summary.trendPMCMR", "title": "Summarize an trendPMCMR Object", "topics": [ "summary.trendPMCMR" ] }, { "page": "summaryGroup", "title": "Grouped Summary of an PMCMR Object", "topics": [ "summaryGroup" ] }, { "page": "tamhaneDunnettTest", "title": "Tamhane-Dunnett Many-to-One Comparison Test", "concept": [ "parametric" ], "topics": [ "tamhaneDunnettTest", "tamhaneDunnettTest.aov", "tamhaneDunnettTest.default", "tamhaneDunnettTest.formula" ] }, { "page": "tamhaneT2Test", "title": "Tamhane's T2 Test", "concept": [ "parametric" ], "topics": [ "tamhaneT2Test", "tamhaneT2Test.aov", "tamhaneT2Test.default", "tamhaneT2Test.formula" ] }, { "page": "toTidy", "title": "Convert a PMCMR or osrt Object to a Data.Frame", "topics": [ "toTidy" ] }, { "page": "trout", "title": "Data from a Dose-Response Experiment with Trouts", "topics": [ "trout" ] }, { "page": "tukeyTest", "title": "Tukey's Multiple Comparison Test", "concept": [ "parametric" ], "topics": [ "tukeyTest", "tukeyTest.aov", "tukeyTest.default", "tukeyTest.formula" ] }, { "page": "uryWigginsHochbergTest", "title": "Ury, Wiggins, Hochberg Test", "concept": [ "parametric" ], "topics": [ "uryWigginsHochbergTest", "uryWigginsHochbergTest.aov", "uryWigginsHochbergTest.default", "uryWigginsHochbergTest.formula" ] }, { "page": "vanWaerdenAllPairsTest", "title": "van-der-Waerden's All-Pairs Comparison Normal Scores Test", "concept": [ "normalscores" ], "topics": [ "vanWaerdenAllPairsTest", "vanWaerdenAllPairsTest.default", "vanWaerdenAllPairsTest.formula" ] }, { "page": "vanWaerdenManyOneTest", "title": "van-der-Waerden's Many-One Comparisons Normal Scores Test", "concept": [ "normalscores" ], "topics": [ "vanWaerdenManyOneTest", "vanWaerdenManyOneTest.default", "vanWaerdenManyOneTest.formula" ] }, { "page": "vanWaerdenTest", "title": "van der Waerden's Normal Scores Test", "topics": [ "vanWaerdenTest", "vanWaerdenTest.default", "vanWaerdenTest.formula", "vanWeardenTest.default" ] }, { "page": "welchManyOneTTest", "title": "Welchs's Many-To-One Comparison Test", "concept": [ "parametric" ], "topics": [ "welchManyOneTTest", "welchManyOneTTest.aov", "welchManyOneTTest.default", "welchManyOneTTest.formula" ] }, { "page": "williamsTest", "title": "Williams Trend Test", "topics": [ "williamsTest", "williamsTest.aov", "williamsTest.default", "williamsTest.formula" ] } ], "_readme": "https://github.com/cran/PMCMRplus/raw/HEAD/README.md", "_rundeps": [ "BWStest", "cachem", "fastmap", "gmp", "kSamples", "MASS", "memoise", "multcompView", "mvtnorm", "Rcpp", "rlang", "Rmpfr", "SuppDists" ], "_vignettes": [ { "source": "QuickReferenceGuide.Rmd", "filename": 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