Package: PLNmodels 1.2.0
PLNmodels: Poisson Lognormal Models
The Poisson-lognormal model and variants (Chiquet, Mariadassou and Robin, 2021 <doi:10.3389/fevo.2021.588292>) can be used for a variety of multivariate problems when count data are at play, including principal component analysis for count data, discriminant analysis, model-based clustering and network inference. Implements variational algorithms to fit such models accompanied with a set of functions for visualization and diagnostic.
Authors:
PLNmodels_1.2.0.tar.gz
PLNmodels_1.2.0.tar.gz(r-4.5-noble)PLNmodels_1.2.0.tar.gz(r-4.4-noble)
PLNmodels_1.2.0.tgz(r-4.4-emscripten)PLNmodels_1.2.0.tgz(r-4.3-emscripten)
PLNmodels.pdf |PLNmodels.html✨
PLNmodels/json (API)
NEWS
# Install 'PLNmodels' in R: |
install.packages('PLNmodels', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pln-team/plnmodels/issues
Pkgdown:https://pln-team.github.io
- barents - Barents fish data set
- mollusk - Mollusk data set
- oaks - Oaks amplicon data set
- scRNA - Single cell RNA-seq data
- trichoptera - Trichoptera data set
Last updated 9 months agofrom:73907cf6ce. Checks:OK: 1 NOTE: 1. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 01 2024 |
R-4.5-linux-x86_64 | NOTE | Dec 01 2024 |
Exports:%>%coefficient_pathcompute_offsetcompute_PLN_starting_pointextract_probsgetBestModelgetModelPLNPLN_paramPLNLDAPLNLDA_paramPLNmixturePLNmixture_paramPLNnetworkPLNnetwork_paramPLNPCAPLNPCA_parampredict_condprepare_datarPLNstability_selectionstandard_errorZIPLNZIPLN_paramZIPLNnetworkZIPLNnetwork_param
Dependencies:bitbit64callrclicodetoolscolorspacecorocorrplotcpp11descdigestdplyrellipsisfansifarverfuturefuture.applygenericsggplot2glassoFastglobalsgluegridExtragtableigraphisobandjsonlitelabelinglatticelifecyclelistenvmagrittrMASSMatrixmgcvmunsellnlmenloptrparallellypillarpkgconfigprocessxpspsclpurrrR6RColorBrewerRcppRcppArmadillorlangsafetensorsscalesstringistringrtibbletidyrtidyselecttorchutf8vctrsviridisLitewithr
Analyzing multivariate count data with the Poisson log-normal model
Rendered fromPLN.Rmd
usingknitr::rmarkdown
on Dec 01 2024.Last update: 2023-08-24
Started: 2019-05-17
Clustering of multivariate count data with PLN-mixture
Rendered fromPLNmixture.Rmd
usingknitr::rmarkdown
on Dec 01 2024.Last update: 2023-01-06
Started: 2021-03-16
Description of the Trichoptera data set
Rendered fromTrichoptera.Rmd
usingknitr::rmarkdown
on Dec 01 2024.Last update: 2023-01-06
Started: 2019-05-17
Dimension reduction of multivariate count data with PLN-PCA
Rendered fromPLNPCA.Rmd
usingknitr::rmarkdown
on Dec 01 2024.Last update: 2023-01-06
Started: 2019-05-17
Data importation in PLNmodels
Rendered fromImport_data.Rmd
usingknitr::rmarkdown
on Dec 01 2024.Last update: 2024-01-09
Started: 2019-05-17
Sparse structure estimation for multivariate count data with PLN-network
Rendered fromPLNnetwork.Rmd
usingknitr::rmarkdown
on Dec 01 2024.Last update: 2023-01-06
Started: 2019-05-17
Supervized classification of multivariate count table with the Poisson discriminant Analysis
Rendered fromPLNLDA.Rmd
usingknitr::rmarkdown
on Dec 01 2024.Last update: 2023-01-06
Started: 2019-05-17