Package: PLNmodels 1.2.2

To cite PLNmodels (either PLNPCA or PLNnetwork) in publications, please use:

J. Chiquet, M. Mariadassou and S. Robin: The Poisson-lognormal model as a versatile framework for the joint analysis of species abundances, Frontiers in Ecology and Evolution, 2021.

J. Chiquet, M. Mariadassou and S. Robin: Variational inference for sparse network reconstruction from count data, Proceedings of the 36th International Conference on Machine Learning (ICML), 2019.

J. Chiquet, M. Mariadassou and S. Robin: Variational inference for probabilistic Poisson PCA, the Annals of Applied Statistics, 2018.

Corresponding BibTeX entries:

  @Article{PLNmodels,
    author = {Julien Chiquet and Mahendra Mariadassou and Stéphane
      Robin},
    title = {The Poisson-lognormal model as a versatile framework for
      the joint analysis of species abundances},
    journal = {Frontiers in Ecology and Evolution},
    year = {2021},
    doi = {10.3389/fevo.2021.588292},
    url =
      {https://www.frontiersin.org/articles/10.3389/fevo.2021.588292},
  }

  @InProceedings{PLNnetwork,
    author = {Julien Chiquet and Mahendra Mariadassou and Stéphane
      Robin},
    title = {Variational inference for sparse network reconstruction
      from count data},
    booktitle = {Proceedings of the 36th International Conference on
      Machine Learning},
    year = {2019},
    volume = {97},
    series = {Proceedings of Machine Learning Research},
    url = {http://proceedings.mlr.press/v97/chiquet19a.html},
  }

  @Article{PLNPCA,
    author = {Julien Chiquet and Mahendra Mariadassou and Stéphane
      Robin},
    title = {Variational inference for probabilistic Poisson PCA},
    journal = {The Annals of Applied Statistics},
    year = {2018},
    volume = {12},
    pages = {2674--2698},
    url =
      {https://projecteuclid.org/journals/annals-of-applied-statistics/volume-12/issue-4/Variational-inference-for-probabilistic-Poisson-PCA/10.1214/18-AOAS1177.full},
  }