Package: NicheBarcoding 1.0

Cai-qing YANG

NicheBarcoding: Niche-model-Based Species Identification

Species Identification using DNA Barcodes Integrated with Environmental Niche Models.

Authors:Cai-qing YANG [aut, cre], Xin-hai Li [aut], Michael christopher ORR [aut], Ai-bing ZHANG [aut]

NicheBarcoding_1.0.tar.gz
NicheBarcoding_1.0.tar.gz(r-4.7-any)NicheBarcoding_1.0.tar.gz(r-4.6-any)
NicheBarcoding_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
NicheBarcoding/json (API)

# Install 'NicheBarcoding' in R:
install.packages('NicheBarcoding', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yangcq-ivy/nichebarcoding/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT
Datasets:
  • bak.vir - Bak.vir data set, a class of matrix.
  • en.vir - En.vir data set, a class of RasterBrick.
  • LappetMoths - LappetMoths data set, a list of 8 data frames.

On CRAN:

Conda:

openjdk

3.18 score 7 scripts 221 downloads 9 exports 24 dependencies

Last updated from:262f8e2594. Checks:2 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE270
source / vignettesOK219
linux-release-x86_64NOTE248
wasm-releaseOK124

Exports:extractSpeInfomonophyly.propNBSINBSI2niche.Model.Buildniche.PCApseudo.absent.pointspseudo.present.pointsspe.mantel.test

Dependencies:apeclassclusterdigestdismoe1071latticemapsMASSMatrixmgcvnlmepegaspermutepROCproxyrandomForestrasterRcpprJavaspspiderterravegan

Niche-model-Based Species Identification

Rendered fromhow-to-do-stuff-NBSI.Rmdusingknitr::rmarkdownon May 23 2026.

Last update: 2021-12-21
Started: 2021-12-21

NicheBaroding species identification

Rendered fromhow_it_works.Rmdusingknitr::rmarkdownon May 23 2026.

Last update: 2021-12-21
Started: 2021-12-21

NicheBaroding Species Identification

Rendered fromNBSI.Rmdusingknitr::rmarkdownon May 23 2026.

Last update: 2021-12-21
Started: 2021-12-21