Package: NicheBarcoding 1.0

Cai-qing YANG

NicheBarcoding: Niche-model-Based Species Identification

Species Identification using DNA Barcodes Integrated with Environmental Niche Models.

Authors:Cai-qing YANG [aut, cre], Xin-hai Li [aut], Michael christopher ORR [aut], Ai-bing ZHANG [aut]

NicheBarcoding_1.0.tar.gz
NicheBarcoding_1.0.tar.gz(r-4.5-noble)NicheBarcoding_1.0.tar.gz(r-4.4-noble)
NicheBarcoding_1.0.tgz(r-4.4-emscripten)NicheBarcoding_1.0.tgz(r-4.3-emscripten)
NicheBarcoding.pdf |NicheBarcoding.html✨
NicheBarcoding/json (API)

# Install 'NicheBarcoding' in R:
install.packages('NicheBarcoding', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/yangcq-ivy/nichebarcoding/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT
Datasets:
  • LappetMoths - LappetMoths data set, a list of 8 data frames.
  • bak.vir - Bak.vir data set, a class of matrix.
  • en.vir - En.vir data set, a class of RasterBrick.

3.18 score 7 scripts 190 downloads 9 exports 25 dependencies

Last updated 3 years agofrom:262f8e2594. Checks:OK: 1 NOTE: 1. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 03 2024
R-4.5-linuxNOTEOct 03 2024

Exports:extractSpeInfomonophyly.propNBSINBSI2niche.Model.Buildniche.PCApseudo.absent.pointspseudo.present.pointsspe.mantel.test

Dependencies:apeclassclusterdigestdismoe1071latticemapsMASSMatrixmgcvnlmepegaspermuteplyrpROCproxyrandomForestrasterRcpprJavaspspiderterravegan

Niche-model-Based Species Identification

Rendered fromhow-to-do-stuff-NBSI.Rmdusingknitr::rmarkdownon Oct 03 2024.

Last update: 2021-12-21
Started: 2021-12-21

NicheBaroding species identification

Rendered fromhow_it_works.Rmdusingknitr::rmarkdownon Oct 03 2024.

Last update: 2021-12-21
Started: 2021-12-21

NicheBaroding Species Identification

Rendered fromNBSI.Rmdusingknitr::rmarkdownon Oct 03 2024.

Last update: 2021-12-21
Started: 2021-12-21