Package: NetRep 1.2.7

Scott Ritchie

NetRep: Permutation Testing Network Module Preservation Across Datasets

Functions for assessing the replication/preservation of a network module's topology across datasets through permutation testing; Ritchie et al. (2015) <doi:10.1016/j.cels.2016.06.012>.

Authors:Scott Ritchie [aut, cre]

NetRep_1.2.7.tar.gz
NetRep_1.2.7.tar.gz(r-4.5-noble)NetRep_1.2.7.tar.gz(r-4.4-noble)
NetRep_1.2.7.tgz(r-4.4-emscripten)NetRep_1.2.7.tgz(r-4.3-emscripten)
NetRep.pdf |NetRep.html
NetRep/json (API)

# Install 'NetRep' in R:
install.packages('NetRep', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/sritchie73/netrep/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:

openblascpp

3.86 score 3 packages 379 downloads 8 mentions 21 exports 10 dependencies

Last updated 1 years agofrom:da589decad. Checks:OK: 1 NOTE: 1. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 11 2024
R-4.5-linux-x86_64NOTEDec 11 2024

Exports:as.disk.matrixas.matrixattach.disk.matrixcombineAnalysesis.disk.matrixload.bigMatrixmodulePreservationnetworkPropertiesnodeOrderpermutationTestplotContributionplotCorrelationplotDataplotDegreeplotModuleplotNetworkplotSummaryrequiredPermssampleOrderserialize.tableshow

Dependencies:abindBHcodetoolsforeachiteratorsRColorBrewerRcppRcppArmadilloRhpcBLASctlstatmod

NetRep

Rendered fromNetRep.Rmdusingknitr::rmarkdownon Dec 11 2024.

Last update: 2018-06-12
Started: 2016-07-29

Readme and manuals

Help Manual

Help pageTopics
The 'disk.matrix' classas.disk.matrix as.disk.matrix,ANY-method as.disk.matrix,disk.matrix-method as.disk.matrix,matrix-method as.matrix,disk.matrix-method attach.disk.matrix disk.matrix is.disk.matrix serialize.table show,disk.matrix-method
Example datadiscovery_correlation discovery_data discovery_network example-data module_labels NetRep-data test_correlation test_data test_network
Replication and preservation of network modules across datasetsmodulePreservation
Fast permutation procedure for testing network module replicationNetRep-package NetRep
Calculate the topological properties for a network modulenetworkProperties
Plot the topology of a network moduleplotModule
How many permutations do I need to test at my desired significance level?requiredPerms