Package: NetRep 1.2.7
Scott Ritchie
NetRep: Permutation Testing Network Module Preservation Across Datasets
Functions for assessing the replication/preservation of a network module's topology across datasets through permutation testing; Ritchie et al. (2015) <doi:10.1016/j.cels.2016.06.012>.
Authors:
NetRep_1.2.7.tar.gz
NetRep_1.2.7.tar.gz(r-4.5-noble)NetRep_1.2.7.tar.gz(r-4.4-noble)
NetRep_1.2.7.tgz(r-4.4-emscripten)NetRep_1.2.7.tgz(r-4.3-emscripten)
NetRep.pdf |NetRep.html✨
NetRep/json (API)
| # Install 'NetRep' in R: |
| install.packages('NetRep', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sritchie73/netrep/issues
- discovery_correlation - Example data
- discovery_data - Example data
- discovery_network - Example data
- module_labels - Example data
- test_correlation - Example data
- test_data - Example data
- test_network - Example data
Last updated 1 years agofrom:da589decad. Checks:OK: 1 NOTE: 1. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 12 2024 |
| R-4.5-linux-x86_64 | NOTE | Oct 12 2024 |
Exports:as.disk.matrixas.matrixattach.disk.matrixcombineAnalysesis.disk.matrixload.bigMatrixmodulePreservationnetworkPropertiesnodeOrderpermutationTestplotContributionplotCorrelationplotDataplotDegreeplotModuleplotNetworkplotSummaryrequiredPermssampleOrderserialize.tableshow
Dependencies:abindBHcodetoolsforeachiteratorsRColorBrewerRcppRcppArmadilloRhpcBLASctlstatmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The 'disk.matrix' class | as.disk.matrix as.disk.matrix,ANY-method as.disk.matrix,disk.matrix-method as.disk.matrix,matrix-method as.matrix,disk.matrix-method attach.disk.matrix disk.matrix is.disk.matrix serialize.table show,disk.matrix-method |
| Example data | discovery_correlation discovery_data discovery_network example-data module_labels NetRep-data test_correlation test_data test_network |
| Replication and preservation of network modules across datasets | modulePreservation |
| Fast permutation procedure for testing network module replication | NetRep-package NetRep |
| Calculate the topological properties for a network module | networkProperties |
| Plot the topology of a network module | plotModule |
| How many permutations do I need to test at my desired significance level? | requiredPerms |
