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      "page": "disk.matrix",
      "title": "The 'disk.matrix' class",
      "topics": [
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        "as.matrix,disk.matrix-method",
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      "title": "Example data",
      "topics": [
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        "discovery_data",
        "discovery_network",
        "example-data",
        "module_labels",
        "NetRep-data",
        "test_correlation",
        "test_data",
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    {
      "page": "modulePreservation",
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      "topics": [
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    },
    {
      "page": "NetRep",
      "title": "Fast permutation procedure for testing network module replication",
      "topics": [
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        "NetRep"
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    },
    {
      "page": "networkProperties",
      "title": "Calculate the topological properties for a network module",
      "topics": [
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    },
    {
      "page": "plotModule",
      "title": "Plot the topology of a network module",
      "topics": [
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    },
    {
      "page": "requiredPerms",
      "title": "How many permutations do I need to test at my desired significance level?",
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      "source": "NetRep.Rmd",
      "filename": "NetRep.html",
      "title": "NetRep",
      "author": "Scott Ritchie",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "System requirements and installation troubleshooting",
        "OSX",
        "Windows",
        "Linux",
        "Data required for a NetRep analysis",
        "Tutorial data",
        "Setting up the input lists",
        "Running the permutation procedure to test module preservation",
        "The module preservation statistics",
        "Choosing the right statistics",
        "Sparse networks",
        "Directed networks",
        "Sparse data",
        "Proportional data",
        "Homogenous modules",
        "Small network modules",
        "Visualising network modules",
        "Tweaking the plot appearance",
        "Plotting the individual components",
        "Calculating the network properties of a module",
        "Managing memory with large datasets",
        "Using disk.matrix with the plotting functions",
        "Running NetRep on a cluster",
        "Setting the number of threads",
        "Estimating wall time",
        "Estimating memory usage",
        "Optimising runtime"
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      "created": "2016-07-29 06:40:57",
      "modified": "2018-06-12 12:33:55",
      "commits": 3
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