Package: MPSEM 0.5-1
Guillaume Guénard
MPSEM: Modelling Phylogenetic Signals using Eigenvector Maps
Computational tools to represent phylogenetic signals using adapted eigenvector maps.
Authors:
MPSEM_0.5-1.tar.gz
MPSEM_0.5-1.tar.gz(r-4.5-noble)MPSEM_0.5-1.tar.gz(r-4.4-noble)
MPSEM_0.5-1.tgz(r-4.4-emscripten)MPSEM_0.5-1.tgz(r-4.3-emscripten)
MPSEM.pdf |MPSEM.html✨
MPSEM/json (API)
| # Install 'MPSEM' in R: |
| install.packages('MPSEM', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 days agofrom:5970ecb4d9. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 24 2024 |
| R-4.5-linux-x86_64 | OK | Oct 24 2024 |
Exports:add.edgeadd.vertexcollapse.vertexdstGraphEvolveOptimMarkovTreegetAncGraphLocationsgetGraphLocationsInflMatlmforwardsequentialAICclmforwardsequentialsidakLocations2PEMscoresOUvarPEM.buildPEM.fitSimplePEM.forcedSimplePEM.updaterPEMvarPEMweightsPhylo2DirectedGraphpop.graphrm.edgerm.vertexTraitOUsimTreeTraitVarGraphSim
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Modelling Phylogenetic Signals using Eigenvector Maps | MPSEM-package |
| Distance-Based Directed Graph | dstGraph |
| Class and Method for Directed Graphs | graph graph-class print.graph |
| MPSEM graph Manipulation Functions | add.edge add.vertex collapse.vertex graph-functions Phylo2DirectedGraph pop.graph rm.edge rm.vertex |
| Linear Modelling Utility Functions | lm-utils lmforwardsequentialAICc lmforwardsequentialsidak utils |
| Class and Methods for Phylogenetic Eigenvector Maps (PEM) | as.data.frame.PEM PEM PEM-class predict.PEM print.PEM |
| Phylogenetic Eigenvector Maps | getAncGraphLocations getGraphLocations InflMat Locations2PEMscores PEM-functions PEM.build PEM.fitSimple PEM.forcedSimple PEM.updater PEMweights |
| Simulate the Evolution of a Quantitative Trait | EvolveOptimMarkovTree OUvar PEMvar simulation trait trait-simulator TraitOUsimTree TraitVarGraphSim |