Package: KnockoffTrio 1.0.2
Yi Yang
KnockoffTrio: Trio Data Analysis with Knockoff Statistics for FDR Control
Identification of putative causal variants in genome-wide association studies with the trio design. The package implements the methods in the paper: Yang, Y., Wang, C., Liu, L., Buxbaum, J., He, Z., & Ionita-Laza, I. (2022). KnockoffTrio: A knockoff framework for the identification of putative causal variants in genome-wide association studies with trio design. The American Journal of Human Genetics, 109(10), 1761-1776.
Authors:
KnockoffTrio_1.0.2.tar.gz
KnockoffTrio_1.0.2.tar.gz(r-4.5-noble)KnockoffTrio_1.0.2.tar.gz(r-4.4-noble)
KnockoffTrio_1.0.2.tgz(r-4.4-emscripten)KnockoffTrio_1.0.2.tgz(r-4.3-emscripten)
KnockoffTrio.pdf |KnockoffTrio.html✨
KnockoffTrio/json (API)
| # Install 'KnockoffTrio' in R: |
| install.packages('KnockoffTrio', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- KnockoffTrio.example - Example data for KnockoffTrio
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 12 months agofrom:84883f8d43. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 11 2024 |
| R-4.5-linux | OK | Nov 11 2024 |
Exports:causal_locicreate_knockoffKnockoffTriometa_analysis
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Identification of causal loci | causal_loci |
| Create knockoff genotype data | create_knockoff |
| Calculate KnockoffTrio's feature statistics | KnockoffTrio |
| Example data for KnockoffTrio | KnockoffTrio.example |
| Meta-analysis for KnockoffTrio | meta_analysis |