{ "_id": "6a1f238cb401979e73420b87", "Package": "KnockoffTrio", "Title": "GWAS with Trio and Duo Data using Knockoff Statistics for FDR\nControl", "Version": "1.1.0", "Authors@R": "person(given = \"Yi\",\nfamily = \"Yang\",\nrole = c(\"aut\", \"cre\"),\nemail = \"yi.yang@cityu.edu.hk\",\ncomment = c(ORCID = \"0000-0002-1471-4026\"))", "Description": "Identification of putative causal variants in genome-wide\nassociation studies with trio and duo families. The package\ncalculates the W feature statistics from KnockoffTrio and\np-values from the family-based association test (FBAT) using\ntrio and/or duo data. Compared to previous versions, a\nsignificant improvement has been made in Version 1.1.0 to allow\nthe package to be applied not only to trio families but also to\nduo families. The package implements the methods in the paper:\n\"Yang, Y., Wang, C., Liu, L., Buxbaum, J., He, Z., &\nIonita-Laza, I. (2022). KnockoffTrio: A knockoff framework for\nthe identification of putative causal variants in genome-wide\nassociation studies with trio design. The American Journal of\nHuman Genetics, 109(10), 1761-1776.\"", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 06:51:05 UTC", "User": "root" }, "Author": "Yi Yang [aut, cre] ()", "Maintainer": "Yi Yang ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-01-23 09:40:06 UTC", "RemoteUrl": "https://github.com/cran/KnockoffTrio", "RemoteRef": "HEAD", "RemoteSha": "6e42ea3a5e13fca54321074873c79d24f096e44e", "MD5sum": "00b2c8af8b15dd098773e91f9862a7f4", "_user": "cran", "_type": "src", "_file": "KnockoffTrio_1.1.0.tar.gz", "_fileid": "06e1b10be2d6764a4b5eb178d7f2c32225d305e69fd45b4e91089cff97680688", "_filesize": 122385, "_sha256": "06e1b10be2d6764a4b5eb178d7f2c32225d305e69fd45b4e91089cff97680688", "_created": "2026-05-16T06:51:05.000Z", "_published": "2026-06-02T18:40:12.092Z", "_distro": "noble", "_jobs": [ { "job": 79145688934, "time": 97, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7031349827" }, { "job": 79145688926, "time": 98, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7031350005" }, { "job": 79145687930, "time": 112, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7031336853" }, { "job": 79145687910, "time": 80, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7366714513" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/25955396390", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/KnockoffTrio", "_commit": { "id": "6e42ea3a5e13fca54321074873c79d24f096e44e", "author": "Yi Yang ", "committer": "cran-robot ", "message": "version 1.1.0\n", "time": 1737625206 }, "_maintainer": { "name": "Yi Yang", "email": "yi.yang@cityu.edu.hk", "orcid": "0000-0002-1471-4026" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 309, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/KnockoffTrio" }, "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/KnockoffTrio.html", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.0.0", "date": "2022-03-07" }, { "version": "1.0.1", "date": "2022-10-17" }, { "version": "1.0.2", "date": "2023-12-08" }, { "version": "1.1.0", "date": "2025-01-23" } ], "_exports": [ "causal_loci", "create_knockoff", "KnockoffTrio", "meta_analysis" ], "_datasets": [ { "name": "KnockoffTrio.example", "title": "Example data for KnockoffTrio", "object": "KnockoffTrio.example", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "causal_loci", "title": "Identification of putative causal loci", "topics": [ "causal_loci" ] }, { "page": "create_knockoff", "title": "Create knockoff genotype data", "topics": [ "create_knockoff" ] }, { "page": "KnockoffTrio", "title": "Calculate KnockoffTrio's feature statistics", "topics": [ "KnockoffTrio" ] }, { "page": "KnockoffTrio.example", "title": "Example data for KnockoffTrio", "topics": [ "KnockoffTrio.example" ] }, { "page": "meta_analysis", "title": "Meta-analysis for KnockoffTrio", "topics": [ "meta_analysis" ] } ], "_rundeps": [], "_score": 1, "_indexed": true, "_nocasepkg": "knockofftrio", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-05-16T06:52:46.000Z", "distro": "noble", "commit": "6e42ea3a5e13fca54321074873c79d24f096e44e", "fileid": "75196b4d3bbb5894ff791cba6f4c24044245f15f5ba643505bad9339f7dc152d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/25955396390" }, { "r": "4.6.0", "os": "linux", "version": "1.1.0", "date": "2026-05-16T06:52:47.000Z", "distro": "noble", "commit": "6e42ea3a5e13fca54321074873c79d24f096e44e", "fileid": "72c4375a0e2f8d9c2546e5e7dad31af5cec0daf4519776b9dbd2519c871258ca", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/25955396390" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-06-02T18:39:54.000Z", "commit": "6e42ea3a5e13fca54321074873c79d24f096e44e", "fileid": "80a9e51f46acdeda6581e5b38fd03609a5a4ac5754bfc7e8584da044ba883f0e", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/25955396390" } ] }