Package: KnockoffHybrid 1.0.1
Yi Yang
KnockoffHybrid: Hybrid Analysis of Population and Trio Data with Knockoff Statistics for FDR Control
Identification of putative causal variants in genome-wide association studies using hybrid analysis of both the trio and population designs. The package implements the method in the paper: Yang, Y., Wang, Q., Wang, C., Buxbaum, J., & Ionita-Laza, I. (2024). KnockoffHybrid: A knockoff framework for hybrid analysis of trio and population designs in genome-wide association studies. The American Journal of Human Genetics, in press.
Authors:
KnockoffHybrid_1.0.1.tar.gz
KnockoffHybrid_1.0.1.tar.gz(r-4.5-noble)KnockoffHybrid_1.0.1.tar.gz(r-4.4-noble)
KnockoffHybrid_1.0.1.tgz(r-4.4-emscripten)KnockoffHybrid_1.0.1.tgz(r-4.3-emscripten)
KnockoffHybrid.pdf |KnockoffHybrid.html✨
KnockoffHybrid/json (API)
| # Install 'KnockoffHybrid' in R: |
| install.packages('KnockoffHybrid', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- KnockoffHybrid.example - Example data for KnockoffHybrid
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 months agofrom:e0ea5ff885. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 10 2024 |
| R-4.5-linux | OK | Sep 10 2024 |
Exports:calculate_weightcausal_locicreate_knockoffKnockoffHybrid
Dependencies:codetoolsforeachglmnetiteratorslatticeMatrixRcppRcppEigenshapeSPAtestsurvival
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate weight from population designs | calculate_weight |
| Identification of causal loci | causal_loci |
| Create knockoff genotype data in trio designs | create_knockoff |
| Calculate KnockoffHybrid's feature statistics | KnockoffHybrid |
| Example data for KnockoffHybrid | KnockoffHybrid.example |