{
  "_id": "6ab8d25c99f7aa8c6aa36f34",
  "Package": "KnockoffHybrid",
  "Title": "Hybrid Analysis of Population and Trio Data with Knockoff\nStatistics for FDR Control",
  "Version": "1.0.1",
  "Authors@R": "person(given = \"Yi\",\nfamily = \"Yang\",\nrole = c(\"aut\", \"cre\"),\nemail = \"yi.yang@cityu.edu.hk\",\ncomment = c(ORCID = \"0000-0002-1471-4026\"))",
  "Description": "Identification of putative causal variants in genome-wide\nassociation studies using hybrid analysis of both the trio and\npopulation designs. The package implements the method in the\npaper: Yang, Y., Wang, Q., Wang, C., Buxbaum, J., &\nIonita-Laza, I. (2024). KnockoffHybrid: A knockoff framework\nfor hybrid analysis of trio and population designs in\ngenome-wide association studies. The American Journal of Human\nGenetics, in press.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.1.2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-27 08:19:36 UTC",
    "User": "root"
  },
  "Author": "Yi Yang [aut, cre] (<https://orcid.org/0000-0002-1471-4026>)",
  "Maintainer": "Yi Yang <yi.yang@cityu.edu.hk>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2024-06-12 02:42:55 UTC",
  "RemoteUrl": "https://github.com/cran/KnockoffHybrid",
  "RemoteRef": "HEAD",
  "RemoteSha": "e0ea5ff885d6eae51e4dd18bcd6c8bf73224d24e",
  "_user": "cran",
  "_type": "src",
  "_file": "KnockoffHybrid_1.0.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/7648b0e91b9bb747c6d5c02c8f79dc26e0d46b1853c595e38bf65fb2b7447cdb",
  "_filesize": 115925,
  "_sha256": "7648b0e91b9bb747c6d5c02c8f79dc26e0d46b1853c595e38bf65fb2b7447cdb",
  "_expires": "2027-01-05T08:22:50.000Z",
  "_created": "2026-09-27T08:19:36.000Z",
  "_published": "2026-09-27T08:22:52.243Z",
  "_jobs": [
    {
      "job": 108582261177,
      "time": 164,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10926958753"
    },
    {
      "job": 108582261164,
      "time": 120,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10927013541"
    },
    {
      "job": 108581752954,
      "time": 201,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10926809075"
    },
    {
      "job": 108582261178,
      "time": 128,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10927475854"
    },
    {
      "job": 108582261135,
      "time": 78,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10927451483"
    },
    {
      "job": 108582261150,
      "time": 72,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10927013460"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/36305661672",
  "_status": "success",
  "_upstream": "https://github.com/cran/KnockoffHybrid",
  "_commit": {
    "id": "e0ea5ff885d6eae51e4dd18bcd6c8bf73224d24e",
    "author": "Yi Yang <yi.yang@cityu.edu.hk>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.1\n",
    "time": 1718160175
  },
  "_maintainer": {
    "name": "Yi Yang",
    "email": "yi.yang@cityu.edu.hk",
    "orcid": "0000-0002-1471-4026"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "glmnet",
      "role": "Imports"
    },
    {
      "package": "SPAtest",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 630,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 404,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/KnockoffHybrid"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/KnockoffHybrid.html",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2023-09-05"
    },
    {
      "version": "1.0.1",
      "date": "2024-06-11"
    }
  ],
  "_exports": [
    "calculate_weight",
    "causal_loci",
    "create_knockoff",
    "KnockoffHybrid"
  ],
  "_datasets": [
    {
      "name": "KnockoffHybrid.example",
      "title": "Example data for KnockoffHybrid",
      "object": "KnockoffHybrid.example",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "calculate_weight",
      "title": "Calculate weight from population designs",
      "topics": [
        "calculate_weight"
      ]
    },
    {
      "page": "causal_loci",
      "title": "Identification of causal loci",
      "topics": [
        "causal_loci"
      ]
    },
    {
      "page": "create_knockoff",
      "title": "Create knockoff genotype data in trio designs",
      "topics": [
        "create_knockoff"
      ]
    },
    {
      "page": "KnockoffHybrid",
      "title": "Calculate KnockoffHybrid's feature statistics",
      "topics": [
        "KnockoffHybrid"
      ]
    },
    {
      "page": "KnockoffHybrid.example",
      "title": "Example data for KnockoffHybrid",
      "topics": [
        "KnockoffHybrid.example"
      ]
    }
  ],
  "_readme": "https://github.com/cran/KnockoffHybrid/raw/HEAD/README.md",
  "_rundeps": [
    "codetools",
    "foreach",
    "glmnet",
    "iterators",
    "lattice",
    "Matrix",
    "Rcpp",
    "RcppEigen",
    "shape",
    "SPAtest",
    "survival"
  ],
  "_score": 1.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "knockoffhybrid",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-09-27T08:22:12.000Z",
      "distro": "resolute",
      "commit": "e0ea5ff885d6eae51e4dd18bcd6c8bf73224d24e",
      "fileid": "https://r2.ropensci.org/347e8c18f7543037c88050ba35bc4fabf125a7c1d5afa51a80ac4bdf2434babc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36305661672"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-09-27T08:21:27.000Z",
      "distro": "resolute",
      "commit": "e0ea5ff885d6eae51e4dd18bcd6c8bf73224d24e",
      "fileid": "https://r2.ropensci.org/68bf9dcd9a48ff13ac76b3f014fb6a03ab790690b46e2c339d9dfc637a97f90f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36305661672"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.1",
      "date": "2026-09-27T08:21:58.000Z",
      "commit": "e0ea5ff885d6eae51e4dd18bcd6c8bf73224d24e",
      "fileid": "https://r2.ropensci.org/c5ca4e9c979bb65b68205ea19d66f2be8dc64d030fb8fc3c6b38093d3a63ad6e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36305661672"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-09-27T08:20:39.000Z",
      "commit": "e0ea5ff885d6eae51e4dd18bcd6c8bf73224d24e",
      "fileid": "https://r2.ropensci.org/2c1192252cca42a432504b3d6efdaa12f3a1b320e33000b73165a8cb092f95da",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36305661672"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-09-27T08:20:32.000Z",
      "commit": "e0ea5ff885d6eae51e4dd18bcd6c8bf73224d24e",
      "fileid": "https://r2.ropensci.org/bf72c54be1eef6b6537ab7537b40d11e0133b68b3fea999fc85a75499173e0b1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36305661672"
    }
  ]
}