Package: KRIS 1.1.6

Kridsadakorn Chaichoompu

KRIS: Keen and Reliable Interface Subroutines for Bioinformatic Analysis

Provides useful functions which are needed for bioinformatic analysis such as calculating linear principal components from numeric data and Single-nucleotide polymorphism (SNP) dataset, calculating fixation index (Fst) using Hudson method, creating scatter plots in 3 views, handling with PLINK binary file format, detecting rough structures and outliers using unsupervised clustering, and calculating matrix multiplication in the faster way for big data.

Authors:Kridsadakorn Chaichoompu [aut, cre], Kristel Van Steen [aut], Fentaw Abegaz [aut], Sissades Tongsima [aut], Philip James Shaw [aut], Anavaj Sakuntabhai [aut], Luisa Pereira [aut]

KRIS_1.1.6.tar.gz
KRIS_1.1.6.tar.gz(r-4.5-noble)KRIS_1.1.6.tar.gz(r-4.4-noble)
KRIS_1.1.6.tgz(r-4.4-emscripten)KRIS_1.1.6.tgz(r-4.3-emscripten)
KRIS.pdf |KRIS.html✨
KRIS/json (API)
NEWS

# Install 'KRIS' in R:
install.packages('KRIS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • sample_labels - Synthetic dataset containing population labels for the dataset simsnp.
  • simsnp - Synthetic dataset containing single nucleotide polymorphisms

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

9 exports 1.00 score 6 dependencies 2 dependents 1 mentions 18 scripts 214 downloads

Last updated 4 years agofrom:ac8c515667. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 02 2024
R-4.5-linuxOKSep 02 2024

Exports:cal.pc.linearcal.pc.projectionfst.each.snp.hudsonfst.hudsonplot3viewsread.bedrubikclustwrite.bedxxt

Dependencies:latticeMatrixrARPACKRcppRcppEigenRSpectra