{ "_id": "6a107109acfb0bcc41cabbb4", "Package": "KRIS", "Type": "Package", "Title": "Keen and Reliable Interface Subroutines for Bioinformatic\nAnalysis", "Version": "1.1.6", "Authors@R": "c(person(given = \"Kridsadakorn\", family = \"Chaichoompu\", email = \"kridsadakorn@biostatgen.org\", role = c(\"aut\", \"cre\")),person(given = \"Kristel\", family = 'Van Steen', role = \"aut\"),person(given = \"Fentaw\", family = \"Abegaz\", role = \"aut\"),person(given = \"Sissades\", family = \"Tongsima\", role = \"aut\"),person(given = \"Philip\", family = \"James Shaw\", role = \"aut\"),person(given = \"Anavaj\", family = \"Sakuntabhai\", role = \"aut\"),person(given = \"Luisa\", family = \"Pereira\", role = \"aut\"))", "Description": "Provides useful functions which are needed for\nbioinformatic analysis such as calculating linear principal\ncomponents from numeric data and Single-nucleotide polymorphism\n(SNP) dataset, calculating fixation index (Fst) using Hudson\nmethod, creating scatter plots in 3 views, handling with PLINK\nbinary file format, detecting rough structures and outliers\nusing unsupervised clustering, and calculating matrix\nmultiplication in the faster way for big data.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.1", "BugReports": "https://gitlab.com/kris.ccp/kris/-/issues", "URL": "https://gitlab.com/kris.ccp/kris", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-07 06:52:36 UTC", "User": "root" }, "Author": "Kridsadakorn Chaichoompu [aut, cre], Kristel Van Steen [aut],\nFentaw Abegaz [aut], Sissades Tongsima [aut], Philip James Shaw\n[aut], Anavaj Sakuntabhai [aut], Luisa Pereira [aut]", "Maintainer": "Kridsadakorn Chaichoompu ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2021-01-21 11:10:02 UTC", "RemoteUrl": "https://github.com/cran/KRIS", "RemoteRef": "HEAD", "RemoteSha": "ac8c5156678f66c276a737f5d0a46722ab87effc", "MD5sum": "bb2c96516a53b895bfd89255e744b3e3", "_user": "cran", "_type": "src", "_file": "KRIS_1.1.6.tar.gz", "_fileid": "61391af011dcdeb143cb23133daa420585fd3330acb422b84b121f4e37b0c6f9", "_filesize": 289477, "_sha256": "61391af011dcdeb143cb23133daa420585fd3330acb422b84b121f4e37b0c6f9", "_created": "2026-05-07T06:52:36.000Z", "_published": "2026-05-22T15:06:49.468Z", "_distro": "noble", "_jobs": [ { "job": 77406944534, "time": 130, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6848739181" }, { "job": 77406944317, "time": 149, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6848742094" }, { "job": 77406944061, "time": 175, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6848704519" }, { "job": 77406943845, "time": 101, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7163783891" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/25480623286", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/KRIS", "_commit": { "id": "ac8c5156678f66c276a737f5d0a46722ab87effc", "author": "Kridsadakorn Chaichoompu ", "committer": "cran-robot ", "message": "version 1.1.6\n", "time": 1611227402 }, "_maintainer": { "name": "Kridsadakorn Chaichoompu", "email": "kridsadakorn@biostatgen.org" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "rARPACK", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "kridsadakorn", "count": 1, "uuid": 1006124 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 223, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/KRIS" }, "_mentions": 1, "_searchresults": 20, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/KRIS.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.0.3", "date": "2018-05-07" }, { "version": "1.1.1", "date": "2018-06-04" }, { "version": "1.1.6", "date": "2021-01-21" } ], "_exports": [ "cal.pc.linear", "cal.pc.projection", "fst.each.snp.hudson", "fst.hudson", "plot3views", "read.bed", "rubikclust", "write.bed", "xxt" ], "_datasets": [ { "name": "sample_labels", "title": "Synthetic dataset containing population labels for the dataset simsnp.", "object": "example_SNP", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "simsnp", "title": "Synthetic dataset containing single nucleotide polymorphisms (SNP)", "object": "example_SNP", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "cal.pc.linear", "title": "Calculate linear principal component analysis (PCA) from numeric data and Single-nucleotide polymorphism (SNP) dataset", "topics": [ "cal.pc.linear" ] }, { "page": "cal.pc.projection", "title": "Calculate linear principal component analysis (PCA) with a projection method for Single-nucleotide polymorphism (SNP) dataset.", "topics": [ "cal.pc.projection" ] }, { "page": "fst.each.snp.hudson", "title": "Calculate the fixation index (Fst) for all SNPs between two groups of individuals from Single-nucleotide polymorphism (SNP)", "topics": [ "fst.each.snp.hudson" ] }, { "page": "fst.hudson", "title": "Calculate the average fixation index (Fst) between two groups of individuals from Single-nucleotide polymorphism (SNP)", "topics": [ "fst.hudson" ] }, { "page": "plot3views", "title": "Create scatter plots in three views.", "topics": [ "plot3views" ] }, { "page": "read.bed", "title": "Read the binary PLINK format (BED, BIM, and FAM)", "topics": [ "read.bed" ] }, { "page": "replace.missing", "title": "(Internal) Replace missing values with other values,internally used for parallelization", "topics": [ "replace.missing" ] }, { "page": "rubikclust", "title": "Unsupervised clustering to detect rough structures and outliers.", "topics": [ "rubikclust" ] }, { "page": "sample_labels", "title": "Synthetic dataset containing population labels for the dataset simsnp.", "topics": [ "sample_labels" ] }, { "page": "simsnp", "title": "Synthetic dataset containing single nucleotide polymorphisms (SNP)", "topics": [ "simsnp" ] }, { "page": "write.bed", "title": "Write a list of SNP object to the binary PLINK format (BED, BIM, and FAM)", "topics": [ "write.bed" ] }, { "page": "xxt", "title": "Calculate matrix multipication between a matrix and its transpose for large data.", "topics": [ "xxt" ] } ], "_readme": "https://github.com/cran/KRIS/raw/HEAD/README.md", "_rundeps": [ "lattice", "Matrix", "rARPACK", "Rcpp", "RcppEigen", "RSpectra" ], "_score": 2.4771212547196626, "_indexed": true, "_nocasepkg": "kris", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.6", "date": "2026-05-07T06:54:42.000Z", "distro": "noble", "commit": "ac8c5156678f66c276a737f5d0a46722ab87effc", "fileid": "9fbf204e0207a9f319ace683cdbebd1c7ff7aa0637a22a2f209c28d73cbf2589", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/25480623286" }, { "r": "4.6.0", "os": "linux", "version": "1.1.6", "date": "2026-05-07T06:54:52.000Z", "distro": "noble", "commit": "ac8c5156678f66c276a737f5d0a46722ab87effc", "fileid": "784ef50a55c320bce75b8eed3ac577f17fc36f06d06f503a11bd76373995c4ee", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/25480623286" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.6", "date": "2026-05-22T15:06:30.000Z", "commit": "ac8c5156678f66c276a737f5d0a46722ab87effc", "fileid": "821a94bda245aca35d07bd798b98807d9ada13c220d8a312cd1993d5d0effe5d", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/25480623286" } ] }