Package: JAGStree 1.0.1

Mallory J Flynn

JAGStree: Automatically Write 'JAGS' Code for Hierarchical Bayesian Models on Trees

When relationships between sources of data can be represented by a tree, the generation of appropriate Markov Chain Monte Carlo modeling code to be used with 'JAGS' to run a Bayesian hierarchical model can be automatically generated by this package. Any admissible tree-structured data can be used, under the assumption that node counts are multinomial and branching probabilities are Dirichlet among sibling groups. The methodological basis used to create this package can be found in Flynn (2023) <http://hdl.handle.net/2429/86174>.

Authors:Mallory J Flynn [cre, aut]

JAGStree_1.0.1.tar.gz
JAGStree_1.0.1.tar.gz(r-4.5-noble)JAGStree_1.0.1.tar.gz(r-4.4-noble)
JAGStree_1.0.1.tgz(r-4.4-emscripten)JAGStree_1.0.1.tgz(r-4.3-emscripten)
JAGStree.pdf |JAGStree.html✨
JAGStree/json (API)
NEWS

# Install 'JAGStree' in R:
install.packages('JAGStree', repos = 'https://cloud.r-project.org')

Bug tracker:https://github.com/malfly/jagstree/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • data1 - Simple Tree Data 1
  • data2 - Simple Tree Data 2
  • data3 - Simple Tree Data 3

On CRAN:

Conda:

jagscpp

2.00 score 465 downloads 1 exports 122 dependencies

Last updated 5 months agofrom:ba1a7b6ad7. Checks:1 OK, 2 NOTE. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 26 2025
R-4.5-linuxNOTEMar 26 2025
R-4.4-linuxNOTEMar 26 2025

Exports:makeJAGStree

Dependencies:abindaskpassAutoWMMbackportsbase64encbitbit64blobbootbroombslibcachemcallrcellrangerclicliprcodacolorspaceconflictedcpp11crayoncurldata.tabledata.treeDBIdbplyrdenstripDiagrammeRdigestdplyrdtplyrevaluatefansifarverfastmapfontawesomeforcatsfsgarglegenericsggplot2gluegoogledrivegooglesheets4gtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttridsigraphisobandjquerylibjsonliteknitrlabelinglatticelifecyclelubridatemagrittrMASSMatrixmcmcplotsmemoisemgcvmimemodelrmunsellnlmeopensslpillarpkgconfigprettyunitsprocessxprogresspspurrrR2jagsR2WinBUGSR6raggrappdirsRColorBrewerreadrreadxlrematchrematch2reprexrjagsrlangrmarkdownrstudioapirvestsassscalesselectrsfsmiscstringistringrsyssystemfontstextshapingtibbletidyrtidyselecttidyversetimechangetinytextzdbutf8uuidvctrsviridisLitevisNetworkvroomwithrxfunxml2yaml

JAGStree: R code that writes 'JAGS' code

Rendered fromJAGStree.Rmdusingknitr::rmarkdownon Mar 26 2025.

Last update: 2024-11-11
Started: 2024-11-11

Citation

To cite package ‘JAGStree’ in publications use:

Flynn M (2024). JAGStree: Automatically Write 'JAGS' Code for Hierarchical Bayesian Models on Trees. R package version 1.0.1, https://CRAN.R-project.org/package=JAGStree.

Corresponding BibTeX entry: 

  @Manual{,
    title = {JAGStree: Automatically Write 'JAGS' Code for Hierarchical
      Bayesian Models on Trees},
    author = {Mallory J Flynn},
    year = {2024},
    note = {R package version 1.0.1},
    url = {https://CRAN.R-project.org/package=JAGStree},
  }